TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular tr... 129 7e-035
>gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 129 bits (276), Expect(2) = 7e-035
Identities = 44/92 (47%), Positives = 66/92 (71%)
Frame = +1 / +2
Query: 169 KFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDR 348
++YN+LIN L+ GIQP VT+++YD+P+ L++ Y WL+ E+ +DFT +A++CF+ FGDR
Sbjct: 5 QYYNNLINELIRNGIQPHVTLHNYDLPQALEDEYEGWLSREVIKDFTNYADVCFREFGDR 184
Query: 349 VKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
VK+W T NEPN+ +Y PP CS P+
Sbjct: 185 VKYWTTVNEPNIFAVGSYDQGISPPRRCSPPF 280
Score = 31.8 bits (63), Expect(2) = 7e-035
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 448 KXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
+ GNS+ Y+ H+++LAH+ +YR
Sbjct: 290 ESTKGNSTFEPYLVVHHILLAHSSAVRLYR 379
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,866,161
Number of Sequences: 7669
Number of extensions: 40987
Number of successful extensions: 773
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 128911182
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)