TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 29 0.072
gb|CO512149.1|CO512149 s13dSG34E0300019_108618 Glandular tr... 27 2.7
gb|CO513084.1|CO513084 s13dSG89F0100011_122094 Glandular tr... 27 2.7
gb|CO512297.1|CO512297 s13dSG68C1000070_114108 Glandular tr... 26 3.7
gb|CO514900.1|CO514900 s13dSG56G0300024_328460 Glandular tr... 26 3.7
gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, co... 26 3.7
gb|CO516873.1|CO516873 s13dSG98H0800074_447074 Glandular tr... 26 5.1
gb|CO517008.1|CO517008 s13dSG81H0800074_468562 Glandular tr... 26 5.1
gb|CO512581.1|CO512581 s13dSG08G1100084_121088 Glandular tr... 25 7.1
gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular tr... 25 9.7
gb|CO512647.1|CO512647 s13dSG13H0200016_121220 Glandular tr... 25 9.7
gb|CO512678.1|CO512678 s13dSG19C0900066_121282 Glandular tr... 25 9.7
gb|CO514885.1|CO514885 s13dSG56E0600051_328430 Glandular tr... 25 9.7
gb|CO516714.1|CO516714 s13dSG74D1200102_446756 Glandular tr... 25 9.7
emb|X54089.1|MSLEGBRC M.sativa leghemoglobin gene for leghe... 25 9.7
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 29.0 bits (57), Expect(2) = 0.072
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / -1
Query: 248 RTLEFSLASCSTFSCSVPLV 189
R +FS ASC+ F CS P++
Sbjct: 438 RIFKFSRASCAAFCCSSPIL 379
Score = 21.7 bits (41), Expect(2) = 0.072
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2 / -1
Query: 128 SSEDLTSCAHNGPFT*GSIISRRLLANAMASSS 30
S DL SC G F * + + + + SSS
Sbjct: 234 SDMDLPSCTRTGTFL*TGLYCKSISLLFLKSSS 136
>gb|CO512149.1|CO512149 s13dSG34E0300019_108618 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 26.7 bits (52), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1 / -1
Query: 199 TLHEKVLQLAKLNSNVLQLHHQQEL 273
T+H +LQ+ L+ ++L+LHH L
Sbjct: 560 TIHLPLLQMHHLHRHLLRLHHHCHL 486
>gb|CO513084.1|CO513084 s13dSG89F0100011_122094 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 26.7 bits (52), Expect = 2.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3 / -3
Query: 550 ISCNLGGLEPLWDPSFRCN**VFHIL 473
I C +G LE +W+ C V+HI+
Sbjct: 182 IPCRVGDLELIWETGSICLSGVYHII 105
>gb|CO512297.1|CO512297 s13dSG68C1000070_114108 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 402
Score = 26.3 bits (51), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1 / +2
Query: 349 CFLWILGVYYEPCHSRARIILTMVIAIVT 435
CFLW+ VY R R IL V+ ++T
Sbjct: 311 CFLWLSAVYL*FSIRRIRRILIHVLVMMT 397
>gb|CO514900.1|CO514900 s13dSG56G0300024_328460 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 411
Score = 26.3 bits (51), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1 / +2
Query: 349 CFLWILGVYYEPCHSRARIILTMVIAIVT 435
CFLW+ VY R R IL V+ ++T
Sbjct: 317 CFLWLSAVYL*FSIRRIRRILIHVLVMMT 403
>gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, complete cds
Length = 6860
Score = 26.3 bits (51), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3 / -3
Query: 409 ILSGLLNDTVHSILLRSIENTPRFYLV 329
I+ GLLND+ + L + + P FY V
Sbjct: 387 IVCGLLNDSTYIFLNSYLVSNPTFYWV 307
>gb|CO516873.1|CO516873 s13dSG98H0800074_447074 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 507
Score = 25.8 bits (50), Expect = 5.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 82 YVKGPLWAH 108
YVKGP+W H
Sbjct: 247 YVKGPMWVH 273
>gb|CO517008.1|CO517008 s13dSG81H0800074_468562 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 25.8 bits (50), Expect = 5.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1 / +2
Query: 108 MRPQWPFHVGQHH 70
+ P+WPF V +HH
Sbjct: 185 LSPKWPFTVERHH 223
>gb|CO512581.1|CO512581 s13dSG08G1100084_121088 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 627
Score = 25.4 bits (49), Expect = 7.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -1 / +2
Query: 108 MRPQWPFHVGQHH 70
+ P+WPF + +HH
Sbjct: 185 LSPKWPFTIERHH 223
>gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 24.9 bits (48), Expect = 9.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / +3
Query: 254 SCRTLEFSLASCSTFSC 204
SC + S ++CS+FSC
Sbjct: 105 SCEMVSTSRSTCSSFSC 155
>gb|CO512647.1|CO512647 s13dSG13H0200016_121220 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 568
Score = 24.9 bits (48), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3 / -3
Query: 214 PSHAAFHLSHTHGCNTLTRRS 152
PS +A + HT+GC + R S
Sbjct: 557 PSKSALNPLHTNGCKQIARPS 495
>gb|CO512678.1|CO512678 s13dSG19C0900066_121282 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 612
Score = 24.9 bits (48), Expect = 9.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2 / -1
Query: 2 RISGPMGRQYSMKPSRSREAVWR*CCPT*KGHCG 103
+I R YS +P RS +W T G CG
Sbjct: 495 QIQSRRNRSYS*EPWRSPSRIWLTTSRTAPGPCG 394
>gb|CO514885.1|CO514885 s13dSG56E0600051_328430 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 24.9 bits (48), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2 / +1
Query: 368 PKIHRKHSTILSRAKGSFDPICISSHHLVRIFS 270
P +H + LSR PI +S +VR+FS
Sbjct: 226 PLLHSPPTNPLSRLLPKLHPITLSLSVVVRLFS 324
>gb|CO516714.1|CO516714 s13dSG74D1200102_446756 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 24.9 bits (48), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2 / -3
Query: 305 CISSHHLVRIFSSC 264
CISS+H RIF C
Sbjct: 128 CISSYHRRRIFCPC 87
>emb|X54089.1|MSLEGBRC M.sativa leghemoglobin gene for leghemoglobin (clone BRC56)
Length = 2358
Score = 24.9 bits (48), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1 / -2
Query: 433 TLLDDIFDSFATPQECEILTNCI 501
T L+ F +F+ + CEIL +CI
Sbjct: 1211 T*LNRCFIAFSISRRCEILISCI 1143
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,797,750
Number of Sequences: 7669
Number of extensions: 81002
Number of successful extensions: 1523
Number of sequences better than 10.0: 16
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 151330518
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)