TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE20c02.yg.2.1
(696 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular tr... 57 1e-027
>gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 57.0 bits (118), Expect(3) = 1e-027
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = -3 / +2
Query: 574 PXXCTQCTAXXNSSTEPYIVVHNILLSHATAVARYRNKYQATQKGKVGI 428
P C + NS+ EPY+VVH+ILL+H++AV YR Y+ Q G VGI
Sbjct: 272 PPFCIIESTKGNSTFEPYLVVHHILLAHSSAVRLYRRTYREEQNGFVGI 418
Score = 51.0 bits (105), Expect(3) = 1e-027
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -3 / +3
Query: 403 PFTNSTEDQKAAQRARDFHIGWFLDPLINGQYP 305
P TN+ +D+ A QR DF++GW ++PL++G YP
Sbjct: 444 PQTNTEKDRAACQRISDFYLGWIMEPLLHGDYP 542
Score = 47.3 bits (97), Expect(3) = 1e-027
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3 / +2
Query: 685 DYAXXXFKTXXXRVKXWXXLXEPRIVAXXGYDKGLXPPXXCT 560
+YA F+ RVK W + EP I A YD+G+ PP C+
Sbjct: 146 NYADVCFREFGDRVKYWTTVNEPNIFAVGSYDQGISPPRRCS 271
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,740,443
Number of Sequences: 7669
Number of extensions: 79270
Number of successful extensions: 918
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 175102830
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)