TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD10d05.sg.3.3
(1563 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512289.1|CO512289 s13dSG68C0200006_114092 Glandular tr... 283 4e-077
>gb|CO512289.1|CO512289 s13dSG68C0200006_114092 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 462
Score = 283 bits (612), Expect = 4e-077
Identities = 113/124 (91%), Positives = 117/124 (94%)
Frame = +2 / +3
Query: 161 LLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDIN 340
LLKDELDIVIPTIRNLDFL MWRPFF+ YHLIIVQDGDP+ IKVPEGFDYELYNRNDIN
Sbjct: 90 LLKDELDIVIPTIRNLDFLVMWRPFFEQYHLIIVQDGDPSNVIKVPEGFDYELYNRNDIN 269
Query: 341 RILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLS 520
RILGPKASCIS KDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+G +I ALEQHIKNLLS
Sbjct: 270 RILGPKASCISLKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEIKALEQHIKNLLS 449
Query: 521 PSTP 532
PSTP
Sbjct: 450 PSTP 461
Score = 122 bits (260), Expect(2) = 3e-043
Identities = 53/61 (86%), Positives = 57/61 (93%)
Frame = -1 / -3
Query: 531 GVDGLRRFLMCCSRALISLPDGSLATKQSSSMV*MYFFLETM*PKQRQAESLKEMQEALG 352
GVDGLRRFLMCCS ALIS P GS ATKQSSSMV*+YFFLET+*PKQRQAESL+E+QEALG
Sbjct: 460 GVDGLRRFLMCCSSALISWPVGSFATKQSSSMV*IYFFLETI*PKQRQAESLREIQEALG 281
Query: 351 P 349
P
Sbjct: 280 P 278
Score = 68.9 bits (144), Expect(2) = 3e-043
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = -1 / -3
Query: 303 PSGTLMVLVGSPSCTMMRW*GWKKGRHISRKSRLRIVGITMXXXXXXSGV 154
PSGTLM L GSPS TMMR KKG HI+RKSRLR+VGITM SGV
Sbjct: 232 PSGTLMTLEGSPS*TMMR*YCSKKGLHITRKSRLRMVGITMSSSSLRSGV 83
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,517,478
Number of Sequences: 7669
Number of extensions: 154065
Number of successful extensions: 895
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 433698832
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)