TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512635.1|CO512635 s13dSG13F0500043_121196 Glandular tr... 50 2e-022
>gb|CO512635.1|CO512635 s13dSG13F0500043_121196 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 49.6 bits (102), Expect(4) = 2e-022
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3 / +2
Query: 237 KRLDGKVAIVTGGARGIGEAIVRLFAKHGARXXXXXXXXXXGEALASALG 386
+RL+GKVAIVTG A GIG V++F ++GA G LA+++G
Sbjct: 65 QRLEGKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHLANSIG 214
Score = 44.6 bits (91), Expect(4) = 2e-022
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3 / +2
Query: 534 SILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRR 641
SIL FD EFD + VN GAA +KHAA M R+
Sbjct: 350 SILEFDLNEFDNTMAVNVRGAAATIKHAAHVMVERK 457
Score = 34.5 bits (69), Expect(4) = 2e-022
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 699 HAYTASKHAIVGLTKNAACELRAH 770
H YTASKH ++GL ++ EL A+
Sbjct: 518 HDYTASKHGLIGLVRSTCSELGAY 589
Score = 26.3 bits (51), Expect(4) = 2e-022
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3 / +2
Query: 390 QVSFVRCDVSVEDDVRRAVDWALSRHG 470
+VS+ CDV E V V + L R+G
Sbjct: 221 KVSYHHCDVRDEKQVEEIVAFTLERYG 301
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,630,636
Number of Sequences: 7669
Number of extensions: 71616
Number of successful extensions: 600
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 333524763
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)