TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515609.1|CO515609 s13dSG47E0500039_418277 Glandular tr... 196 5e-063
gb|CO511782.1|CO511782 s13dSG02A0400033_103464 Glandular tr... 143 3e-062
gb|CO515300.1|CO515300 s13dSG48C1200098_417659 Glandular tr... 190 8e-060
gb|CO514893.1|CO514893 s13dSG56F0300031_328446 Glandular tr... 134 6e-042
gb|CO512362.1|CO512362 s13dSG80A0800053_114238 Glandular tr... 103 1e-035
emb|AJ245868.1|MSA245868 Medicago sativa mRNA for cysteine ... 63 1e-033
>gb|CO515609.1|CO515609 s13dSG47E0500039_418277 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 196 bits (423), Expect(2) = 5e-063
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 779 NGGIDTEADYPFTGHDGTCDLKLKNTRVVSIDSFERVPINYERALQKAVAHQPVSASIEA 958
NGGID+E DYP+ DG CD KN +VV+ID +E VP E ALQKAVA+QP++ ++E
Sbjct: 7 NGGIDSEEDYPYKAIDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEG 186
Query: 959 SRRAFQLYSSGIFDGRCGTYLDHGVTVVGYGSEGGKDYWIVKNSWGTQWGEAGYVRMARN 1138
R FQLY G+F GRCGT LDHGV VGYG+E GKDYWIV+NSWG WGE GY+R+ RN
Sbjct: 187 GGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERN 366
Query: 1139 V 1141
+
Sbjct: 367 L 369
Score = 60.6 bits (126), Expect(2) = 5e-063
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +2 / +1
Query: 1253 VCNAEYSCPEATTCCCVSEYRGKCLAYGCCELENA 1357
VC++ YSC E +TCCC+ EY C +GCC LE+A
Sbjct: 487 VCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESA 591
>gb|CO511782.1|CO511782 s13dSG02A0400033_103464 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 143 bits (306), Expect(2) = 3e-062
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2 / +2
Query: 902 ERALQKAVAHQPVSASIEASRRAFQLYSSGIFDGRCGTYLDHGVTVVGYGSEGGKDYWIV 1081
E ALQKAVA+QP++ ++E R FQLY G+F GRCGT LDHGV VGYG+E GKDYWIV
Sbjct: 5 ELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIV 184
Query: 1082 KNSWGTQWGEAGYVRMARNV 1141
+NSWG WGE GY+R+ RN+
Sbjct: 185 RNSWGGSWGEQGYIRLERNL 244
Score = 111 bits (238), Expect(2) = 3e-062
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +2 / +2
Query: 1253 VCNAEYSCPEATTCCCVSEYRGKCLAYGCCELENATCCEDHSSCCPHDYPVCSVRDG 1423
VC++ YSC E +TCCC+ EY G C +GCC LE+ATCC+D SCCPH+YPVC R G
Sbjct: 362 VCDSYYSCAEGSTCCCIYEYGGSCFEWGCCPLESATCCDDRYSCCPHEYPVCDTRAG 532
>gb|CO515300.1|CO515300 s13dSG48C1200098_417659 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 190 bits (410), Expect(3) = 8e-060
Identities = 74/113 (65%), Positives = 88/113 (77%)
Frame = +2 / +2
Query: 497 VGVVGRRRYLPLAGEQLPDAVDWRERGAVAEVKDQGQCGGCWAFSAVAAVEGINKIVTGS 676
+G V RY P G++LP++VDWR+ GAV VKDQ CG CWAFSA+AAVEGINKIVTG
Sbjct: 248 LGGVRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGD 427
Query: 677 LISLSEQELIDCDKFQDQGCDGGLMDNAFVFMIKNGGIDTEADYPFTGHDGTC 835
LISLSEQEL+DCD ++GC+GGLMD AF F+I NGGID+E DYP+ DG C
Sbjct: 428 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEEDYPYKAIDGRC 586
Score = 133 bits (286), Expect = 5e-032
Identities = 62/100 (62%), Positives = 73/100 (73%)
Frame = -1 / -1
Query: 837 SHVPSWPVNG*SASVSIPPFLIMNTKALSIKPPSQPWSWNLSQSISSCSDSEMRLPVTIL 658
SH+PS + G*S+S S+PP L+MN+KA SI PP P +++SQS SSCSDSE+R PVTIL
Sbjct: 588 SHLPSIAL*G*SSSESMPPLLMMNSKA*SISPPLHPSLYDVSQSTSSCSDSEIRSPVTIL 409
Query: 657 LIPSTAATAENAQHPPHWPWSLTSATAPRSRQSTASGSCS 538
IPSTAA AENAQ P WSLT TAP QST SG+ S
Sbjct: 408 FIPSTAAIAENAQQLPQLAWSLTPTTAPSFLQSTDSGNLS 289
Score = 40.9 bits (83), Expect(3) = 8e-060
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 404 FRLGLTRFADLTLEEYRARLL 466
+RLGLTRFADLT EEYR++ L
Sbjct: 149 YRLGLTRFADLTNEEYRSKFL 211
Score = 33.6 bits (67), Expect(3) = 8e-060
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2 / +2
Query: 326 RRLEVFRDNLRYIDAHN 376
+R E+F+DNL++ID HN
Sbjct: 83 KRFEIFKDNLKFIDEHN 133
>gb|CO514893.1|CO514893 s13dSG56F0300031_328446 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 620
Score = 134 bits (287), Expect(2) = 6e-042
Identities = 44/77 (57%), Positives = 56/77 (72%)
Frame = +2 / +1
Query: 1253 VCNAEYSCPEATTCCCVSEYRGKCLAYGCCELENATCCEDHSSCCPHDYPVCSVRDGTCR 1432
VC++ YSC E +TCCC+ EY C +GCC LE+ATCC+DH SCCPH+YPVC R G C
Sbjct: 193 VCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCL 372
Query: 1433 KSANSPMMVKALQRKPA 1483
K N+P+ VK+ +R PA
Sbjct: 373 KGKNNPLGVKSFKRTPA 423
Score = 52.4 bits (108), Expect(2) = 6e-042
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 1070 YWIVKNSWGTQWGEAGYVRMARNV 1141
YWIV+NSWG WGE GY+R+ RN+
Sbjct: 4 YWIVRNSWGGSWGEQGYIRLERNL 75
>gb|CO512362.1|CO512362 s13dSG80A0800053_114238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 103 bits (220), Expect(3) = 1e-035
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +2 / +1
Query: 530 LAGEQLPDAVDWRERGAVAEVKDQGQCGGCWAFSAVAAVEGINKIVTGSLISLSEQELID 709
L LP+ DWRE+GAV VKDQG CG CWAFS A+EG N + TG L+SLSEQ+L+D
Sbjct: 262 LPTNNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGANYLATGKLVSLSEQQLVD 441
Query: 710 CDKFQD 727
CD D
Sbjct: 442 CDHVCD 459
Score = 52.8 bits (109), Expect(3) = 1e-035
Identities = 17/32 (53%), Positives = 27/32 (84%)
Frame = +2 / +1
Query: 725 DQGCDGGLMDNAFVFMIKNGGIDTEADYPFTG 820
D GC+GGLM+NAF +++++GG+ +E DY +TG
Sbjct: 481 DSGCNGGLMNNAFEYILQSGGVVSEKDYAYTG 576
Score = 27.2 bits (53), Expect(3) = 1e-035
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 413 GLTRFADLTLEEYRARLL 466
G+T+F+DLT E+R + L
Sbjct: 157 GITKFSDLTASEFRRQFL 210
>emb|AJ245868.1|MSA245868 Medicago sativa mRNA for cysteine protease, partial (cyp15a gene)
Length = 890
Score = 62.9 bits (131), Expect(4) = 1e-033
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +2 / +1
Query: 725 DQGCDGGLMDNAFVFMIKNGGIDTEADYPFTGHDGTC 835
D GC+GGLM+NAF +++++GG+ +E DY +TG DG+C
Sbjct: 142 DSGCNGGLMNNAFEYILQSGGVVSEKDYAYTGRDGSC 252
Score = 62.0 bits (129), Expect(4) = 1e-033
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 608 CGGCWAFSAVAAVEGINKIVTGSLISLSEQELIDCDKFQD 727
CG WAFS A+EG N + TG L+SLSEQ+L+DCD D
Sbjct: 1 CGSGWAFSTTGALEGANYLATGKLVSLSEQQLVDCDHVCD 120
Score = 49.6 bits (102), Expect(4) = 1e-033
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2 / +1
Query: 1064 KDYWIVKNSWGTQWGEAGYVRMARNVRV 1147
K YWI+KNSWG WGE GY ++ R V
Sbjct: 499 KPYWIIKNSWGQNWGEEGYYKICRGRNV 582
Score = 28.1 bits (55), Expect(4) = 1e-033
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 1019 LDHGVTVVGYGSEG 1060
LDHGV +VG+GS G
Sbjct: 433 LDHGVLLVGFGSGG 474
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,464,179
Number of Sequences: 7669
Number of extensions: 101934
Number of successful extensions: 954
Number of sequences better than 1.0e-020: 7
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 493833544
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)