TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular tr... 108 7e-052
gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular tr... 80 2e-032
gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular tr... 67 6e-027
>gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 108 bits (231), Expect(2) = 7e-052
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQ 281
EE +I+HLQ LLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK Q
Sbjct: 232 EEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKSQ 372
Score = 108 bits (231), Expect(2) = 7e-052
Identities = 40/49 (81%), Positives = 42/49 (85%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTPVTRK 147
YIQEHGPGNWR+VP TGL RCSKSCRLRWTNYLRPGI+RGNFT K
Sbjct: 94 YIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEK 240
>gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ +G G+WRS+P N GL+RC KSCRLRW NYLR ++RGN +
Sbjct: 245 YIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNIS 376
Score = 72.1 bits (151), Expect(2) = 2e-032
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQAIGAIFAP 305
EE IV L + GNRW+ IAS+LP RTDN+IKN+WN+HL +K+ I P
Sbjct: 383 EEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISTTIEP 547
>gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 413
Score = 67.0 bits (140), Expect(2) = 6e-027
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +1 / +3
Query: 4 IQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
I ++G G W VP GL RC KSCRLRW NYL P I+R +F+
Sbjct: 144 INKYGEGKWHLVPKRAGLNRCRKSCRLRWVNYLNPAIKRESFS 272
Score = 66.1 bits (138), Expect(2) = 6e-027
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +3 / +3
Query: 150 IIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
+I+ L LLGNRW+ IA+ LP RT ND+KNYW+T+L+KK+
Sbjct: 288 MILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTNLRKKV 407
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,885,696
Number of Sequences: 7669
Number of extensions: 17570
Number of successful extensions: 1733
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 40
effective length of database: 941,808
effective search space used: 88529952
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)