TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular tr... 119 7e-028
gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular tr... 110 4e-025
gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular tr... 109 7e-025
gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular tr... 100 6e-022
gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular tr... 100 6e-022
>gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 119 bits (254), Expect = 7e-028
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = +1 / +1
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RC KSCRLRW NYLRP ++ G FT++E+ +I+ L +G++W+ IAS LP RTDND+KNY
Sbjct: 154 RCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNY 333
Query: 181 WNTKLKKRYLASST 222
WNT LKK+ S T
Sbjct: 334 WNTHLKKKLKKSQT 375
>gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 110 bits (234), Expect = 4e-025
Identities = 38/73 (52%), Positives = 56/73 (76%)
Frame = +1 / +2
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RCGKSCRLRW+NYLR +L+ G + +E+ I+ L+ G++WS+IAS LPGRTDN++KN+
Sbjct: 305 RCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNH 484
Query: 181 WNTKLKKRYLASS 219
WN+ L ++ + S
Sbjct: 485 WNSHLSRKIYSFS 523
>gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 413
Score = 109 bits (232), Expect = 7e-025
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
RC KSCRLRW+NYL P ++ F+ +E +IL L+ +G++WS+IA+RLPGRT NDVKNY
Sbjct: 201 RCRKSCRLRWVNYLNPAIKRESFSHDEIDMILRLHKLLGNRWSLIAARLPGRTANDVKNY 380
Query: 181 WNTKLKKRYL 210
W+T L+K+ +
Sbjct: 381 WHTNLRKKVI 410
>gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 99.6 bits (211), Expect = 6e-022
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW N L P++ H FT EED I+ + G+KW+ IA L GRTDN +KN+
Sbjct: 255 RSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNH 434
Query: 181 WNTKLKKR 204
WN+ LK++
Sbjct: 435 WNSTLKRK 458
>gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 99.6 bits (211), Expect = 6e-022
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = +1 / +3
Query: 1 RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
R GKSCRLRW N L P++ H FT EED I+ + G+KW+ IA L GRTDN +KN+
Sbjct: 153 RSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNH 332
Query: 181 WNTKLKKR 204
WN+ LK++
Sbjct: 333 WNSTLKRK 356
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,861,547
Number of Sequences: 7669
Number of extensions: 96659
Number of successful extensions: 4548
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 275640300
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)