TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515387.1|CO515387 s13dSG49E1100087_417833 Glandular tr... 103 3e-027
>gb|CO515387.1|CO515387 s13dSG49E1100087_417833 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 329
Score = 103 bits (220), Expect(2) = 3e-027
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = +2 / +1
Query: 341 CCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGF 490
CCN+TI+D+F YQFENLF+KRN P AHA GFWDY++FITAAAL+EP GF
Sbjct: 178 CCNETISDYFHTYQFENLFSKRNDPTAHASGFWDYRSFITAAALYEPLGF 327
Score = 31.3 bits (62), Expect(2) = 3e-027
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 130 KKLCDKGWECKGWSVNC 180
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,824,878
Number of Sequences: 7669
Number of extensions: 29304
Number of successful extensions: 963
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 129845321
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)