TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3922840.2.1
         (683 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO513284.1|CO513284  s13dSG37B1200093_129732 Glandular tr...   126   4e-030
gb|AJ248332.1|AJ248332  AJ248332 Medicago sativa subsp. x va...    97   2e-021

>gb|CO513284.1|CO513284 s13dSG37B1200093_129732 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 585

 Score =  126 bits (269), Expect = 4e-030
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = -1 / +2

                                                                       
Query: 482 HGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTH 303
           H  A  IDC   C YRCSK+ R K+C+RAC +CC++C CVPPGTSGN D CPCYA++ TH
Sbjct: 140 HMVAAQIDCNGKCGYRCSKASRQKICMRACNSCCKKCNCVPPGTSGNTDTCPCYASLTTH 319

                   
Query: 302 DGQHKCP* 279
            G+ KCP*
Sbjct: 320 GGKLKCP* 343



>gb|AJ248332.1|AJ248332 AJ248332 Medicago sativa subsp. x varia young root nodule Medicago
           sativa subsp. x varia cDNA clone MsNod605, mRNA sequence
          Length = 394

 Score = 96.8 bits (205), Expect = 2e-021
 Identities = 32/63 (50%), Positives = 42/63 (66%)
 Frame = -1 / +2

                                                                       
Query: 458 CGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP* 279
           C + C  RCSK+     CL+ CG CC++C CVP GT GN+D CPCY +MK   G+ KCP*
Sbjct: 17  CTSKCPVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGKGKCP* 196

              
Query: 278 SIH 270
            ++
Sbjct: 197 FVN 205



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,145,266
Number of Sequences: 7669
Number of extensions: 68272
Number of successful extensions: 1451
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 171396950
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)