TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF537205.1| Medicago sativa apoplastic invertase-like mR... 102 4e-025
>gb|AF537205.1| Medicago sativa apoplastic invertase-like mRNA, partial sequence
Length = 714
Score = 102 bits (218), Expect(2) = 4e-025
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = -1 / +1
Query: 1268 DDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAKRRRVLWGWVG 1089
D +HD+Y +G YD + + P + D LRYD+GK+YASKTF+D K RR+L GW
Sbjct: 1 DTKHDHYLIGTYDTVKDVFVPDNGFEDNQNVLRYDYGKYYASKTFFDDGKNRRILLGWAN 180
Query: 1088 ETDSERADVSKGWASLQGIPRTVLL 1014
E+ S DV KGW+ + IPR + L
Sbjct: 181 ESSSVVDDVKKGWSGIHTIPRAIWL 255
Score = 31.3 bits (62), Expect(2) = 4e-025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1 / +2
Query: 785 GAAGRGALGPFGLFVLADRRLR 720
GA+ +G +GPFGL VLA + L+
Sbjct: 485 GASVKGGVGPFGLHVLASKGLQ 550
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,974,624
Number of Sequences: 7669
Number of extensions: 142756
Number of successful extensions: 1120
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 45
effective length of database: 903,463
effective search space used: 520394688
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)