TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA,... 119 2e-029
gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box pr... 100 7e-022
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 100 7e-022
gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular tr... 99 1e-021
gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular tr... 98 3e-021
>gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA, partial cds
Length = 775
Score = 119 bits (255), Expect(2) = 2e-029
Identities = 48/81 (59%), Positives = 65/81 (80%)
Frame = -2 / +1
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGKI+IKRIENTT+RQV F KRRNGLLKKA EL++LCDAEV +++FSS +LY++A+ S+
Sbjct: 1 RGKIQIKRIENTTNRQVIFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSL 180
Query: 815 KSTIERYKKANSDSSNSGTVA 753
+S I RY K+ + + G+ A
Sbjct: 181 RSVIGRYNKSKEEHNQLGSTA 243
Score = 24.9 bits (48), Expect(2) = 2e-029
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 740 QYYQQESSKLRQMIHSLQNAN 678
++ Q+E++ LRQ +H+LQ ++
Sbjct: 253 KFGQREAAVLRQQLHNLQESH 315
>gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box protein mRNA, complete cds
Length = 965
Score = 99.6 bits (211), Expect = 7e-022
Identities = 40/62 (64%), Positives = 53/62 (85%)
Frame = -2 / +1
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGKI+IKRIENTT+RQV + KRRNGL KKA EL+VLCDA+V++++FSS G+L+EY + S
Sbjct: 7 RGKIQIKRIENTTNRQVIYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSA 186
Query: 815 KS 810
+
Sbjct: 187 ST 192
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 99.6 bits (211), Expect = 7e-022
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = -2 / +2
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
RGKI+IKRIENTT+RQVT+ KRR+GL KKA EL+VLCDA+V++++FSS G+L+EY + S
Sbjct: 1160 RGKIQIKRIENTTNRQVTYSKRRDGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPS 1336
>gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 98.7 bits (209), Expect = 1e-021
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = -2 / +2
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GR K+++KRIE+ +RQVTF KRR GLLKKA E+SVLCDAEVAL++FS G+L++Y+ +S
Sbjct: 35 GRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYSTDS 214
Query: 818 VKSTI 804
I
Sbjct: 215 CMEQI 229
>gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 97.7 bits (207), Expect = 3e-021
Identities = 39/65 (60%), Positives = 51/65 (78%)
Frame = -2 / +1
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GR K+++KRIE+ +RQVTF KRR GLLKKA E+SVLCDAEVAL++FS G+L+ Y+ +S
Sbjct: 94 GRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFNYSTDS 273
Query: 818 VKSTI 804
I
Sbjct: 274 CMEQI 288
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,557,651
Number of Sequences: 7669
Number of extensions: 113931
Number of successful extensions: 1080
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 340875171
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)