TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802297.2.1
(606 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514488.1|CO514488 s13dSG43C1100084_327636 Glandular tr... 124 6e-031
>gb|CO514488.1|CO514488 s13dSG43C1100084_327636 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 124 bits (265), Expect(2) = 6e-031
Identities = 46/100 (46%), Positives = 66/100 (66%)
Frame = +2 / +3
Query: 101 RTFLGRPWKEHSRTLYIQSEIGGFIDPQGWLPWLGDFGLSTCYYAKVENHGPGANMSERV 280
++ LGRPW+++SRT+++++ I GFI+P GWLPW G+F L T YYA+ N G G++ S RV
Sbjct: 96 KSHLGRPWQKYSRTVFMKTVIDGFINPAGWLPWDGNFALDTLYYAEYANTGSGSSTSNRV 275
Query: 281 KWRGIKNITYQHAMQKYTVESFIQGQHWLPQLGVPFIPGL 400
W+G +T +TV +FI G W+ GVPF GL
Sbjct: 276 TWKGYHVLTSASQASPFTVGNFIAGNSWIGNTGVPFTSGL 395
Score = 24.0 bits (46), Expect(2) = 6e-031
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2 / +3
Query: 2 AQGRKERRSVGGTVIHNCTVAPHPEFEKS 88
AQGR + G +IHN V+ + S
Sbjct: 3 AQGRTDPNQNTGIIIHNSRVSAQSDLNPS 89
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,742,650
Number of Sequences: 7669
Number of extensions: 66278
Number of successful extensions: 1243
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 149462240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)