TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748501.2.2
         (993 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515289.1|CO515289  s13dSG48B1200101_417637 Glandular tr...   139   4e-059

>gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 603

 Score =  139 bits (298), Expect(2) = 4e-059
 Identities = 51/74 (68%), Positives = 61/74 (82%)
 Frame = +2 / +3

                                                                       
Query: 71  SFTGTQDKCAECDKTVHFIDLLTADGVTYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTH 250
           SF GTQ KC  C+KTV+ +D L+ADG +YHK CF+CSHCKG L + SYSSM+GVLYC+ H
Sbjct: 168 SFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCRPH 347

                         
Query: 251 FEQLFKETGSFSKN 292
           FEQLFKE G+FSKN
Sbjct: 348 FEQLFKEHGNFSKN 389




 Score =  113 bits (241), Expect = 4e-026
 Identities = 41/72 (56%), Positives = 56/72 (77%)
 Frame = +2 / +3

                                                                       
Query: 359 AFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIH 538
           +F GTQ KC AC+KTVYP+++L+ +G SYHK+CF+CSH    L  SSY+++ GVLYC+ H
Sbjct: 168 SFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCRPH 347

                       
Query: 539 FAQLFMEKGSYS 574
           F QLF E G++S
Sbjct: 348 FEQLFKEHGNFS 383




 Score =  104 bits (221), Expect(2) = 4e-059
 Identities = 37/51 (72%), Positives = 43/51 (84%)
 Frame = +2 / +3

                                                              
Query: 329 LTRAPSKLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGC 481
           LTR PSK +  FSGTQ+KCA C KT YPLEK+T+E ++YHKSCFKCSHGGC
Sbjct: 438 LTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGC 590




 Score = 78.0 bits (164), Expect(2) = 1e-026
 Identities = 40/74 (54%), Positives = 47/74 (63%)
 Frame = -1 / -3

                                                                       
Query: 291 FLEKLPVSLKSCSKWVLQYSTPSMEE*LHIERIPLQWLHLKHVLW*VTPSAVRRSMKWTV 112
           FL KLP SLKSCSK  LQ  TPS++E*L   ++PLQ  HLK  LW*  PSA   S   TV
Sbjct: 388 FLLKLPCSLKSCSK*GLQ*RTPSIDE*LLSFKVPLQ*EHLKQALW*EVPSAES*STG*TV 209

                         
Query: 111 LSHSAHLSCVPVKE 70
            S + H   VP+K+
Sbjct: 208 FSQALHFCWVPIKD 167




 Score = 56.5 bits (117), Expect(2) = 1e-026
 Identities = 29/52 (55%), Positives = 32/52 (61%)
 Frame = -1 / -3

                                                               
Query: 480 QPPCEHLKQLLW*DSPSRVNFSSGYTVFWQAAHLS*VPENADDSLLGALVSS 325
           QPPCEHLK  L *   S V FS+G  V    AH S VPEN   +LLG LVS+
Sbjct: 589 QPPCEHLKHDL**AWLSTVTFSNG*AVLPHVAHFSCVPENMPAALLGVLVST 434



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,687,042
Number of Sequences: 7669
Number of extensions: 98505
Number of successful extensions: 1319
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 263695887
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)