TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514488.1|CO514488 s13dSG43C1100084_327636 Glandular tr... 89 4e-023
>gb|CO514488.1|CO514488 s13dSG43C1100084_327636 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 89.0 bits (188), Expect(2) = 4e-023
Identities = 29/69 (42%), Positives = 51/69 (73%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V ++LGRPW++++RTV M++VIDGF++ G++PW+G L T ++ E+ N G G++ + R
Sbjct: 93 VKSHLGRPWQKYSRTVFMKTVIDGFINPAGWLPWDGNFALDTLYYAEYANTGSGSSTSNR 272
Query: 248 KEMQGFHVM 274
+G+HV+
Sbjct: 273 VTWKGYHVL 299
Score = 32.7 bits (65), Expect(2) = 4e-023
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2 / +3
Query: 284 RALQFTVGHFLHGADWIPETGTP 352
+A FTVG+F+ G WI TG P
Sbjct: 312 QASPFTVGNFIAGNSWIGNTGVP 380
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,550,415
Number of Sequences: 7669
Number of extensions: 41591
Number of successful extensions: 1094
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 138252572
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)