TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular tr... 272 6e-074
gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular tr... 136 8e-067
gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular tr... 216 4e-057
gb|CO514666.1|CO514666 s13dSG46E1100087_327992 Glandular tr... 111 1e-052
gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular tr... 135 7e-033
>gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 272 bits (588), Expect = 6e-074
Identities = 100/131 (76%), Positives = 117/131 (89%)
Frame = +3 / +2
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYS GYGT+TAALSTALFN G +CGSC+E+RC D +WCLPG+I VTATN
Sbjct: 200 TMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDRKWCLPGSILVTATN 379
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTI 425
FCPPN LP+++GGWC+PP HFD+A+P FLRIAQY+AGIVPV++RRVPC ++GGIRFTI
Sbjct: 380 FCPPNNALPNNNGGWCSPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTI 559
Query: 426 NGHSYFNLVLV 458
NGHSYFNLVLV
Sbjct: 560 NGHSYFNLVLV 592
Score = 129 bits (277), Expect = 5e-031
Identities = 60/111 (54%), Positives = 69/111 (62%)
Frame = -2 / -2
Query: 457 TSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGGLHQPPS 278
T T+LK*ECPL+VN +PP GTLL TGT+PA Y A+ RK G A SKC +GGLH PP
Sbjct: 591 TRTKLK*ECPLIVNLIPPLLLQGTLL*ETGTIPALY*AILRKTG*ARSKCCKGGLHHPPL 412
Query: 277 SLGRP*LGGQKLVAVTVMVPGXXXXXXXXXXXX*QDPHAAPSLNSAVLSAA 125
LG+ GGQKLVAVT + PG Q+P P LN AVL AA
Sbjct: 411 LLGKALFGGQKLVAVTKIEPGRHHLRSPAHLISKQEPQLKPLLNKAVLKAA 259
>gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 136 bits (291), Expect(2) = 8e-067
Identities = 49/64 (76%), Positives = 57/64 (89%)
Frame = +3 / +3
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYS GYGT+TAALSTALFN+G +CG+CYE++C ND +WC PG+I VTATN
Sbjct: 150 TMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCNPGSIIVTATN 329
Query: 246 FCPP 257
FCPP
Sbjct: 330 FCPP 341
Score = 133 bits (284), Expect(2) = 8e-067
Identities = 50/65 (76%), Positives = 57/65 (87%)
Frame = +3 / +3
Query: 282 GGWCNPPRPHFDMAEPAFLRIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVT 461
GGWC+PP HFD+++P F IAQYRAGIVPVA+RRV C ++GGIRFTINGHSYFNLVLVT
Sbjct: 342 GGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCKRRGGIRFTINGHSYFNLVLVT 521
Query: 462 NVAGA 476
NV GA
Sbjct: 522 NVGGA 536
Score = 86.3 bits (182), Expect(3) = 1e-022
Identities = 41/65 (63%), Positives = 44/65 (67%)
Frame = -2 / -2
Query: 475 APATLVTSTRLK*ECPLMVNRMPPFFTHGTLLNATGTMPARYCAMRRKAGSAMSKCGRGG 296
AP T VT T+LK*ECPLMVN +PP H TLL ATGT+PA Y AM K G SK GG
Sbjct: 535 APPTFVTRTKLK*ECPLMVNLIPPLLLHLTLL*ATGTIPALY*AMC*KIG*ERSKW*LGG 356
Query: 295 LHQPP 281
HQPP
Sbjct: 355 SHQPP 341
Score = 29.0 bits (57), Expect(3) = 1e-022
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2 / -2
Query: 256 GGQKLVAVTVMVPG 215
GGQKLVAVT++ PG
Sbjct: 340 GGQKLVAVTIIDPG 299
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 169 PHAAPSLNSAVLSAA 125
P P LNSAVL+AA
Sbjct: 253 PQLNPLLNSAVLNAA 209
>gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 538
Score = 216 bits (466), Expect = 4e-057
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTATN 245
T GGACGYGNLYS GYGT+TAALSTALFN G +CGSCYE+RC++D RWC PG+I VTATN
Sbjct: 232 TMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMRCNDDPRWCKPGSIIVTATN 411
Query: 246 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVP 371
FCPPN LP+++GGWCNPP HFDMAEPA+L+IA+YRAGIVP
Sbjct: 412 FCPPNPSLPNNNGGWCNPPLQHFDMAEPAYLQIAEYRAGIVP 537
Score = 97.7 bits (207), Expect = 2e-021
Identities = 46/82 (56%), Positives = 53/82 (64%)
Frame = -2 / -3
Query: 370 GTMPARYCAMRRKAGSAMSKCGRGGLHQPPSSLGRP*LGGQKLVAVTVMVPGXXXXXXXX 191
GT+PA Y A+ R AGSA+SKC +GGLHQPP LG+ GGQK VAVT++ PG
Sbjct: 536 GTIPALYSAI*R*AGSAISKCCKGGLHQPPLLLGKDGFGGQKFVAVTIIEPGLHHLGSSL 357
Query: 190 XXXX*QDPHAAPSLNSAVLSAA 125
*QDP P LN AVLSAA
Sbjct: 356 HLIS*QDPQLKPLLNKAVLSAA 291
>gb|CO514666.1|CO514666 s13dSG46E1100087_327992 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 542
Score = 111 bits (238), Expect(2) = 1e-052
Identities = 40/59 (67%), Positives = 48/59 (81%)
Frame = +3 / +1
Query: 66 TTGGACGYGNLYSTGYGTSTAALSTALFNDGAACGSCYELRCDNDGRWCLPGTITVTAT 242
T GGACGYGNLYS GYG +TAALSTALFN+G +CG+C+EL+CD D RWC PG ++ T
Sbjct: 226 TMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILIT 402
Score = 109 bits (233), Expect(2) = 1e-052
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +3 / +1
Query: 222 TITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLRIAQYRAGIVPV 374
+I +TATNFCPPN+ PSD+GGWCNPPRPH D+A P FL+IAQYRAGIVPV
Sbjct: 388 SILITATNFCPPNFAQPSDNGGWCNPPRPHSDLAMPMFLKIAQYRAGIVPV 540
>gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 314
Score = 135 bits (290), Expect = 7e-033
Identities = 54/76 (71%), Positives = 61/76 (80%)
Frame = +3 / +3
Query: 417 FTINGHSYFNLVLVTNVAGAGDVRSVSIRGSRTGWQPMSRNWGQNWQSNSYLDRQALSFQ 596
FTINGHSYFNLVLVTNV GAGDV SV+I+GSRT WQ MSRNWGQNWQSNSYL+ Q+LS
Sbjct: 6 FTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSVV 185
Query: 597 VTASDGRTVTSNGAVP 644
VT +G ++ S P
Sbjct: 186 VTTGNGHSIVSFNVAP 233
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,279,031
Number of Sequences: 7669
Number of extensions: 56685
Number of successful extensions: 754
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 272883897
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)