TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3670912.2.1
         (844 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X58180.1|MSPAL  M.sativa PAL mRNA for phenylalanine ammo...   178   2e-053

>emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammonia-lyase
          Length = 2409

 Score =  178 bits (383), Expect(4) = 2e-053
 Identities = 70/114 (61%), Positives = 91/114 (79%)
 Frame = +2 / +1

                                                                        
Query: 230  NGDAERDVDTSIFAKVAEFEQQVRAALPKEVEAARAAVENGSPLVPNRIKECRSYPLYRF 409
            NG++E++ +TSIF K+A FE++++  LPKEVE+AR A E+G+P +PN+I  CRSYPLY+F
Sbjct: 1933 NGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKF 2112

                                                                  
Query: 410  VREEVGTEYLTGEKTRSPGEELNKVLVAINQRKHIDPLLECLKEWNGEPLPLC* 571
            VREE+GT  LTGE   SPGEE +K+  A+ Q K IDPLLECL EWNG PLP+C*
Sbjct: 2113 VREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPIC* 2274




 Score =  106 bits (226), Expect = 4e-024
 Identities = 55/113 (48%), Positives = 65/113 (57%)
 Frame = -2 / -2

                                                                        
Query: 567  QSGRGSPFHSLRHSSSGSMCLRWLMATSTLFSSSPGDLVFSPVRYSVPTSSRTNRYSG*D 388
            Q GRG+PFHS +HS  GSM     +A ++L  SSPG++ FSPV   VP+SS TN  SG*D
Sbjct: 2270 QIGRGAPFHSPKHSRRGSMIFP*HIAENSLSHSSPGEMTFSPVSKPVPSSSLTNL*SG*D 2091

                                                                 
Query: 387  RHSLILLGTRGLPFSTAARAASTSLGSAARTCCSNSATLAKMDVSTSRSASPF 229
             H LIL G  G P S A  A STS G       S  A   K++V    S SPF
Sbjct: 2090 LHPLILFGIVGFPLSYAVLALSTSFGKRVFNSSSKVAIF*KIEVLKFFSLSPF 1932




 Score = 29.0 bits (57), Expect(4) = 2e-053
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2 / +1

                         
Query: 77   GRLHNARFCEKDL 115
            G LH +RFCEKDL
Sbjct: 1783 GELHPSRFCEKDL 1821




 Score = 26.7 bits (52), Expect(4) = 2e-053
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1 / +1

                            
Query: 178  YALMQKXRAVLVEHAL 225
            Y L QK R VLV+HAL
Sbjct: 1882 YPLSQKLRQVLVDHAL 1929




 Score = 26.3 bits (51), Expect(4) = 2e-053
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3 / +1

                        
Query: 135  EAVFXYADDPCS 170
            E VF Y DDPCS
Sbjct: 1840 EHVFAYIDDPCS 1875



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,236,413
Number of Sequences: 7669
Number of extensions: 58168
Number of successful extensions: 786
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 220499860
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)