TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3588987.2.1
         (487 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF512999.1|  Medicago sativa TPR1 (tpr1) mRNA, complete cds    187   8e-049

>gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds
          Length = 1264

 Score =  187 bits (403), Expect = 8e-049
 Identities = 80/112 (71%), Positives = 92/112 (82%)
 Frame = -1 / +1

                                                                        
Query: 487  LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
            LETYQ GLKH   NQELL+GVR CV+QI + SRG+++ EELKERQ KAMQDPEIQNIL D
Sbjct: 742  LETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMQDPEIQNILQD 921

                                                                
Query: 307  PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGLS 152
            P+M+QVL D QENP+AAQ H KNPGVM KIQKL+SAGIVQMK*    M+ L+
Sbjct: 922  PVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK*I*WKMAALA 1077




 Score = 85.8 bits (181), Expect(2) = 2e-025
 Identities = 36/53 (67%), Positives = 40/53 (75%)
 Frame = +3 / -3

                                                                 
Query: 177  VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
            +YFI TIPAL SFWI  ITPGFL C+CAA GFS +S  TC + GS RMF ISG
Sbjct: 1052 IYFIWTIPALISFWILSITPGFLVCSCAAFGFSWKSTNTCLITGS*RMF*ISG 894




 Score = 43.7 bits (89), Expect(2) = 2e-025
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3 / -3

                                   
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA 473
           +IC T L TPSSNSW F  CF P+
Sbjct: 827 LICFTQLRTPSSNSWLFASCFNPS 756



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 3,939,047
Number of Sequences: 7669
Number of extensions: 47231
Number of successful extensions: 1615
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 112096680
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)