TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.1
(987 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular tr... 115 1e-054
gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular tr... 106 1e-049
gb|CO514666.1|CO514666 s13dSG46E1100087_327992 Glandular tr... 135 6e-044
gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular tr... 117 8e-038
gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular tr... 61 2e-021
>gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 115 bits (245), Expect(2) = 1e-054
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -1 / +3
Query: 717 PKDQWCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVT 538
P WC PP HFDLS P F IAQ +AGIVP++YRRV C ++GGIR+TI G+ YFN+V
Sbjct: 336 PPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCKRRGGIRFTINGHSYFNLVL 515
Query: 537 ITNVGGA 517
+TNVGGA
Sbjct: 516 VTNVGGA 536
Score = 113 bits (241), Expect(2) = 1e-054
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = -1 / +3
Query: 984 HGKFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGG 805
+G+ W AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG
Sbjct: 78 NGRGGHASWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGA 257
Query: 804 CYEVRCVDSPSGCKPDAAALVVT 736
CYE++CV+ P C P + + T
Sbjct: 258 CYEIKCVNDPQWCNPGSIIVTAT 326
Score = 65.7 bits (137), Expect(2) = 3e-021
Identities = 33/62 (53%), Positives = 35/62 (56%)
Frame = +2 / -2
Query: 761 GLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 940
GLH G TH S*H PQ P NS VL A V P P YP AP +VP+ S PP*K
Sbjct: 301 GLHHCGSFTHLIS*HAPQLNPLLNSAVLNAAVFVP*PWL*RFPYPQAPPIVPEASLPP*K 122
Query: 941 VA 946
VA
Sbjct: 121 VA 116
Score = 50.6 bits (104), Expect(2) = 3e-021
Identities = 29/62 (46%), Positives = 33/62 (53%)
Frame = +2 / -2
Query: 518 APPTLVIVTMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGG 697
APPT V T LK P+MV +PP H TL * GT+PA A+ G RSK GG
Sbjct: 535 APPTFVTRTKLK*ECPLMVNLIPPLLLHLTLL*ATGTIPALY*AMC*KIG*ERSKW*LGG 356
Query: 698 LH 703
H
Sbjct: 355 SH 350
>gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 106 bits (226), Expect(2) = 1e-049
Identities = 39/77 (50%), Positives = 47/77 (61%)
Frame = -1 / +2
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W AHATFYGG D SGT GACGY + +QGYG T A+ST LF G +CG C+E+RC
Sbjct: 146 GGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRC 325
Query: 786 VDSPSGCKPDAAALVVT 736
C P + + T
Sbjct: 326 AGDRKWCLPGSILVTAT 376
Score = 105 bits (223), Expect(2) = 1e-049
Identities = 37/57 (64%), Positives = 47/57 (82%)
Frame = -1 / +2
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACAKQGGIRYTITGNKYFNMVTI 535
WC PP +HFDL+ P FL+IAQ KAGIVP+SYRRV C ++GGIR+TI G+ YFN+V +
Sbjct: 422 WCSPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLV 592
Score = 62.0 bits (129), Expect(2) = 1e-022
Identities = 34/77 (44%), Positives = 36/77 (46%)
Frame = +2 / -2
Query: 737 VTTSAAASGLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 916
V + G H L H S PQ P N VL A V P P YPHAP +VP
Sbjct: 375 VAVTKIEPGRHHLRSPAHLISKQEPQLKPLLNKAVLKAAVFVP*P*LYRFPYPHAPPIVP 196
Query: 917 DPSRPP*KVAWAGFHGP 967
D S PP*KVA A H P
Sbjct: 195 DASLPP*KVACALTHPP 145
Score = 59.3 bits (123), Expect(2) = 1e-022
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +2 / -2
Query: 542 TMLKYLFPVMVYRMPPCFAHATLR*EIGTMPAFSCAIWRNAGMLRSKCSRGGLHH 706
T LK P++V +PP TL *E GT+PA AI R G RSKC +GGLHH
Sbjct: 585 TKLK*ECPLIVNLIPPLLLQGTLL*ETGTIPALY*AILRKTG*ARSKCCKGGLHH 421
>gb|CO514666.1|CO514666 s13dSG46E1100087_327992 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 542
Score = 135 bits (290), Expect(2) = 6e-044
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = -1 / +1
Query: 981 GKFTAGPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGC 802
G +T GPW AHATFYGG D SGT GACGY + +QGYGV T A+ST LF +G +CG C
Sbjct: 157 GVYTGGPWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGAC 336
Query: 801 YEVRCVDSPSGCKPDAAALVVTVTDLCPP 715
+E++C P C P ++++T T+ CPP
Sbjct: 337 FELKCDQDPRWCNPGNPSILITATNFCPP 423
Score = 76.7 bits (161), Expect(2) = 2e-021
Identities = 41/89 (46%), Positives = 47/89 (52%)
Frame = +2 / -1
Query: 716 GGHRSVTVTTSAAASGLHPLGLSTHRTS*HPPQAVPSPNSTVLTATVCTPYPCARVSLYP 895
GG + V V GLH G +H +S H PQ P NS VL+A V TP P YP
Sbjct: 422 GGQKFVAVIKIDGFPGLHQRGS*SHLSSKHAPQLKPLLNSAVLSAAVFTP*PWLYRFPYP 243
Query: 896 HAPAVVPDPSRPP*KVAWAGFHGPAVNLP 982
AP +VP+ S PP*KVA A GP V P
Sbjct: 242 QAPPIVPEASLPP*KVA*ALVQGPPV*TP 156
Score = 57.0 bits (118), Expect(2) = 6e-044
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVPI 619
WC PPR H DL+MP FL+IAQ +AGIVP+
Sbjct: 454 WCNPPRPHSDLAMPMFLKIAQYRAGIVPV 540
Score = 40.0 bits (81), Expect(2) = 2e-021
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1 / -3
Query: 619 DRHDAGLLLRDLEERGHAEVEVLPRWLAPLVL 714
D D+G +L DLEE H+++ V RW+AP +
Sbjct: 540 DGDDSGTILSDLEEHRHSKIRVRSRWVAPATI 445
>gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 538
Score = 117 bits (250), Expect(2) = 8e-038
Identities = 43/77 (55%), Positives = 51/77 (66%)
Frame = -1 / +1
Query: 966 GPWKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGTACGGCYEVRC 787
G W+ AHATFYGG D SGT GACGY + +QGYG T A+ST LF G +CG CYE+RC
Sbjct: 178 GGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMRC 357
Query: 786 VDSPSGCKPDAAALVVT 736
D P CKP + + T
Sbjct: 358 NDDPRWCKPGSIIVTAT 408
Score = 54.7 bits (113), Expect(2) = 8e-038
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -1 / +1
Query: 705 WCKPPREHFDLSMPAFLQIAQEKAGIVP 622
WC PP +HFD++ PA+LQIA+ +AGIVP
Sbjct: 454 WCNPPLQHFDMAEPAYLQIAEYRAGIVP 537
>gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 314
Score = 61.1 bits (127), Expect(2) = 2e-021
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = -1 / +3
Query: 480 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 319
R +W M RNWGQ WQ+ L +SL+ V T + S++V P W FG TY
Sbjct: 99 RTRWQAMSRNWGQNWQSNSYLNGQSLSVVVTTGNGHSIVSFNVAPPSWSFGQTY 260
Score = 56.1 bits (116), Expect(2) = 2e-021
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = -1 / +3
Query: 576 YTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 481
+TI G+ YFN+V +TNVGGAGD+ +V++KGS+
Sbjct: 6 FTINGHSYFNLVLVTNVGGAGDVHSVAIKGSR 101
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,320,369
Number of Sequences: 7669
Number of extensions: 130188
Number of successful extensions: 1355
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 261858285
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)