TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO517036.1|CO517036 s13dSG31D1000080_468618 Glandular tr... 69 2e-021
>gb|CO517036.1|CO517036 s13dSG31D1000080_468618 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 556
Score = 68.9 bits (144), Expect(3) = 2e-021
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -2 / +1
Query: 2744 EDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIG 2574
ED TGK V T+PFRLLGS+HLGVVLTF VY+ LP + + E+ ++AT G
Sbjct: 124 EDDRENILRAPTGKFVPTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAG 294
Score = 37.7 bits (76), Expect(3) = 2e-021
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2 / +3
Query: 2858 VMNTMQREPAPPQVEYAPVIFSQDTV 2781
V+ TM+RE + + EYAPVIF+Q+TV
Sbjct: 15 VIKTMEREASQVRDEYAPVIFAQETV 92
Score = 29.5 bits (58), Expect(3) = 2e-021
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 2778 LPCTH*HDVWGGGPRKH 2728
LP +*+DVW G PRKH
Sbjct: 93 LP*VY*YDVWRG*PRKH 143
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 29,904,702
Number of Sequences: 7669
Number of extensions: 444711
Number of successful extensions: 1918
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 952229022
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)