TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943966.2.1
(599 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U20736.1|MSU20736 Medicago sativa S-adenosyl-L-methionin... 172 4e-044
emb|AX259371.1| Sequence 1 from Patent WO0173090 172 4e-044
emb|CQ760958.1| Sequence 3 from Patent WO2004002216 172 4e-044
emb|CQ760964.1| Sequence 9 from Patent WO2004002216 172 4e-044
>gb|U20736.1|MSU20736 Medicago sativa S-adenosyl-L-methionine:trans-caffeoyl-CoA
3-O-methyltransferase (CCOMT) mRNA, complete cds
Length = 966
Score = 172 bits (370), Expect = 4e-044
Identities = 66/122 (54%), Positives = 89/122 (72%)
Frame = -2 / +3
Query: 598 ERAGVAGKVDFREGPALGNLDELLADEANLGAFDFAFVDADKPNYFNYHEQLLRLVRVGG 419
++AGV K+DFREGPAL LDE++ DE N G++DF FVDADK NY NYH++L+ LV+VGG
Sbjct: 408 KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG 587
Query: 418 TIVYDNTLWCGTVAMPPETPMSDIDRRFSAAIRDLNVRLSADERVEVCQLAIADGVTICR 239
I YDNTLW G+V PP+ P+ R + + +LN L+ D R+E+C L + DG+TICR
Sbjct: 588 VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR 767
Query: 238 RL 233
R+
Sbjct: 768 RI 773
>emb|AX259371.1| Sequence 1 from Patent WO0173090
Length = 744
Score = 172 bits (370), Expect = 4e-044
Identities = 66/122 (54%), Positives = 89/122 (72%)
Frame = -2 / +1
Query: 598 ERAGVAGKVDFREGPALGNLDELLADEANLGAFDFAFVDADKPNYFNYHEQLLRLVRVGG 419
++AGV K+DFREGPAL LDE++ DE N G++DF FVDADK NY NYH++L+ LV+VGG
Sbjct: 373 KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG 552
Query: 418 TIVYDNTLWCGTVAMPPETPMSDIDRRFSAAIRDLNVRLSADERVEVCQLAIADGVTICR 239
I YDNTLW G+V PP+ P+ R + + +LN L+ D R+E+C L + DG+TICR
Sbjct: 553 VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR 732
Query: 238 RL 233
R+
Sbjct: 733 RI 738
>emb|CQ760958.1| Sequence 3 from Patent WO2004002216
Length = 744
Score = 172 bits (370), Expect = 4e-044
Identities = 66/122 (54%), Positives = 89/122 (72%)
Frame = -2 / +1
Query: 598 ERAGVAGKVDFREGPALGNLDELLADEANLGAFDFAFVDADKPNYFNYHEQLLRLVRVGG 419
++AGV K+DFREGPAL LDE++ DE N G++DF FVDADK NY NYH++L+ LV+VGG
Sbjct: 373 KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG 552
Query: 418 TIVYDNTLWCGTVAMPPETPMSDIDRRFSAAIRDLNVRLSADERVEVCQLAIADGVTICR 239
I YDNTLW G+V PP+ P+ R + + +LN L+ D R+E+C L + DG+TICR
Sbjct: 553 VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR 732
Query: 238 RL 233
R+
Sbjct: 733 RI 738
>emb|CQ760964.1| Sequence 9 from Patent WO2004002216
Length = 1906
Score = 172 bits (370), Expect = 4e-044
Identities = 66/122 (54%), Positives = 89/122 (72%)
Frame = -2 / +1
Query: 598 ERAGVAGKVDFREGPALGNLDELLADEANLGAFDFAFVDADKPNYFNYHEQLLRLVRVGG 419
++AGV K+DFREGPAL LDE++ DE N G++DF FVDADK NY NYH++L+ LV+VGG
Sbjct: 1348 KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG 1527
Query: 418 TIVYDNTLWCGTVAMPPETPMSDIDRRFSAAIRDLNVRLSADERVEVCQLAIADGVTICR 239
I YDNTLW G+V PP+ P+ R + + +LN L+ D R+E+C L + DG+TICR
Sbjct: 1528 VIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR 1707
Query: 238 RL 233
R+
Sbjct: 1708 RI 1713
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,828,890
Number of Sequences: 7669
Number of extensions: 46558
Number of successful extensions: 1062
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 147593962
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)