TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943885.2.1
(581 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular tr... 102 4e-032
>gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 102 bits (218), Expect(2) = 4e-032
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +2 / +1
Query: 116 ERGLIVPFCPQLEVLAHKATGCFLTHCGWNSTIESIASGVPMVAMPQWADQPTTAKYVES 295
ERG +V +C Q+EVLAH + CF+THCGWNS++E+++ GVP+V P ADQ T AK++
Sbjct: 94 ERGKVVKWCLQVEVLAHPSVACFMTHCGWNSSMEAVSLGVPVVTFPSRADQLTNAKFLAD 273
Query: 296 AWGIGVRMRKG 328
+GIG++M G
Sbjct: 274 VYGIGIKMGCG 306
Score = 49.2 bits (101), Expect(2) = 4e-032
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +2 / +1
Query: 332 LVRKEVERCIREVMGGERKHVYGRNAARWMHKAKEAMQEGGSSDKNIAEF 481
+ R V+ CI E GE+ +NA +W KA+EA+ GGSS +N+ EF
Sbjct: 328 VTRDVVKSCILEATIGEKAEKLKQNAIKWKKKAEEAVAVGGSSHRNLDEF 477
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,171,171
Number of Sequences: 7669
Number of extensions: 66086
Number of successful extensions: 1409
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 141989128
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)