TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular tr... 125 5e-037
>gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 125 bits (267), Expect(2) = 5e-037
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = -3 / +2
Query: 826 YXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRV 647
Y NNLI L++ G P++ L++YDLP ALE +Y GWLS ++ FT+YAD CF+ +GDRV
Sbjct: 8 YYNNLINELIRNGIQPHVTLHNYDLPQALEDEYEGWLSREVIKDFTNYADVCFREFGDRV 187
Query: 646 KHWXXFNEPRIVALLGYDTGSNPPQRCT 563
K+W NEP I A+ YD G +PP+RC+
Sbjct: 188 KYWTTVNEPNIFAVGSYDQGISPPRRCS 271
Score = 44.1 bits (90), Expect(2) = 5e-037
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -3 / +2
Query: 577 PQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYR 470
P C + GNS EPY+V H+ LLAH++AV YR
Sbjct: 272 PPFCIIESTKGNSTFEPYLVVHHILLAHSSAVRLYR 379
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,215,313
Number of Sequences: 7669
Number of extensions: 93771
Number of successful extensions: 861
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 270127494
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)