TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750763.3.1
         (819 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO513899.1|CO513899  s13dSG73H0300028_156460 Glandular tr...   297   8e-082
gb|U41472.1|MSU41472  Medicago sativa pectate lyase homolog ...   214   1e-056

>gb|CO513899.1|CO513899 s13dSG73H0300028_156460 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 584

 Score =  297 bits (644), Expect = 8e-082
 Identities = 114/145 (78%), Positives = 126/145 (86%)
 Frame = +1 / +3

                                                                       
Query: 331 RSINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIY 510
           R IN   ARRNLGYLSCG+GNPIDDCWRCD +W  NR+RLADC IGFG+NAIGG++GKIY
Sbjct: 150 RKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIY 329

                                                                       
Query: 511 VVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVH 690
           VVTD  DDDPV P+ GTLR+AVI +EPLWIIF RDMVI LKEELIMNSFKTIDGRGA+VH
Sbjct: 330 VVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVH 509

                                    
Query: 691 IANGACITIQYITNVIIHGLHIHDC 765
           IA G CITIQY+T  IIHG+HIHDC
Sbjct: 510 IAGGPCITIQYVTKCIIHGIHIHDC 584



>gb|U41472.1|MSU41472 Medicago sativa pectate lyase homolog gene, complete cds
          Length = 3824

 Score =  214 bits (461), Expect = 1e-056
 Identities = 86/147 (58%), Positives = 103/147 (70%)
 Frame = +1 / +2

                                                                        
Query: 379  CGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKG 558
            C   NPID CWRC  DW  NR+ LA C  GFGR   GG  G+IYVVTDPSD+D VNPR G
Sbjct: 2123 CMATNPIDSCWRCRKDWAENRQLLAKCAKGFGRRTTGGLGGRIYVVTDPSDNDMVNPRPG 2302

                                                                        
Query: 559  TLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVI 738
            TLR+  +   PLWIIF+R MVITL +EL+++S KTIDGRGANV I +GA IT+Q++ NVI
Sbjct: 2303 TLRFGAVQRGPLWIIFQRSMVITLTQELMVSSDKTIDGRGANVQIRDGAGITMQFVNNVI 2482

                                       
Query: 739  IHGLHIHDCKPTGNAMVRSSPSHYGWR 819
            IHGL I + K     ++R S  H G R
Sbjct: 2483 IHGLRIKNIKARNGGLIRDSFDHIGVR 2563



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,605,341
Number of Sequences: 7669
Number of extensions: 64943
Number of successful extensions: 782
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 213088100
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)