TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA,... 118 1e-040
gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular tr... 97 6e-029
gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular tr... 98 2e-026
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 99 1e-021
gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box pr... 98 2e-021
>gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA, partial cds
Length = 775
Score = 118 bits (252), Expect(2) = 1e-040
Identities = 46/84 (54%), Positives = 65/84 (77%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GK +IKRIENTTNRQV F KRRNGLLKKA EL++LCDAEV +++FSS +LY++A+ S+
Sbjct: 1 RGKIQIKRIENTTNRQVIFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSL 180
Query: 432 KGTIERYKKATSDNSSAAGTIAEV 503
+ I RY K+ +++ T +E+
Sbjct: 181 RSVIGRYNKSKEEHNQLGSTASEI 252
Score = 63.8 bits (133), Expect(2) = 1e-040
Identities = 28/85 (32%), Positives = 55/85 (64%)
Frame = +3 / +1
Query: 507 IQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVL 686
I+ ++E+A LRQQ+ NLQ S+R ++G+ ++ ++ KEL+ LE +L+ +L +R KK +
Sbjct: 250 IKFGQREAAVLRQQLHNLQESHRQIMGEELSGLTVKELQGLENQLEISLRGVRMKKEQLF 429
Query: 687 CSEVEYMQRREMELQNDNLYLRSRV 761
E++ + R+ + +N+ L +V
Sbjct: 430 MDEIQELNRKGDIIHQENVELYRKV 504
>gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 97.3 bits (206), Expect(2) = 6e-029
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+ K ++KRIE+ NRQVTF KRR GLLKKA E+SVLCDAEVALI+FS G+L+ Y+ +S
Sbjct: 94 GRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFNYSTDS 273
Score = 45.5 bits (93), Expect(2) = 6e-029
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3 / +1
Query: 504 TIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKAL 653
T +++ E RL+ +I L+ + R +G+ + +MSHKEL+ LE +LD L
Sbjct: 352 TQENWTMEYTRLKAKIELLERNQRHYLGEDLDSMSHKELQSLEQQLDTGL 501
>gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 98.2 bits (208), Expect(2) = 2e-026
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +3 / +2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+ K ++KRIE+ NRQVTF KRR GLLKKA E+SVLCDAEVALI+FS G+L++Y+ +S
Sbjct: 35 GRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYSTDS 214
Score = 36.3 bits (73), Expect(2) = 2e-026
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3 / +2
Query: 504 TIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELK 623
T +++ E RL+ +I L+ + R +G+ + +MSHKEL+
Sbjct: 293 TQENWTMEYTRLKAKIELLERNQRHYLGEDLNSMSHKELQ 412
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 98.7 bits (209), Expect = 1e-021
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
+GK +IKRIENTTNRQVT+ KRR+GL KKA EL+VLCDA+V++I+FSS G+L+EY + S
Sbjct: 1160 RGKIQIKRIENTTNRQVTYSKRRDGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPS 1336
>gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box protein mRNA, complete cds
Length = 965
Score = 98.2 bits (208), Expect = 2e-021
Identities = 40/59 (67%), Positives = 51/59 (86%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
+GK +IKRIENTTNRQV + KRRNGL KKA EL+VLCDA+V++I+FSS G+L+EY + S
Sbjct: 7 RGKIQIKRIENTTNRQVIYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPS 183
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,152,613
Number of Sequences: 7669
Number of extensions: 160345
Number of successful extensions: 1267
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 369919592
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)