TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591131.2.1
(596 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular tr... 120 2e-028
>gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 314
Score = 120 bits (256), Expect = 2e-028
Identities = 46/90 (51%), Positives = 62/90 (68%)
Frame = -1 / +3
Query: 458 FTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFE 279
FTI+G ++F VL+TNV G+V +V +KGSRT W M RNWGQNWQ ++ L Q LS
Sbjct: 6 FTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSVV 185
Query: 278 VTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
VT G G ++ +++VAP W F QT+ G+QF
Sbjct: 186 VTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 275
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,262,249
Number of Sequences: 7669
Number of extensions: 28425
Number of successful extensions: 765
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 146659823
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)