TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.2
(660 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515677.1|CO515677 s13dSG60E0400035_419503 Glandular tr... 96 4e-021
gb|CO515988.1|CO515988 s13dSG61F0400041_445304 Glandular tr... 96 4e-021
>gb|CO515677.1|CO515677 s13dSG60E0400035_419503 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 419
Score = 95.9 bits (203), Expect = 4e-021
Identities = 35/56 (62%), Positives = 41/56 (73%)
Frame = -2 / +1
Query: 293 GPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC* 126
GP + AR CESQS +FKGPC+ D NCA+VC TE F+GG C+G R RCFCT C*
Sbjct: 124 GPSMVAEARTCESQSHKFKGPCASDHNCASVCQTERFSGGHCRGFRRRCFCTTHC* 291
>gb|CO515988.1|CO515988 s13dSG61F0400041_445304 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 487
Score = 95.9 bits (203), Expect = 4e-021
Identities = 35/56 (62%), Positives = 41/56 (73%)
Frame = -2 / +3
Query: 293 GPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC* 126
GP + AR CESQS +FKGPC+ D NCA+VC TE F+GG C+G R RCFCT C*
Sbjct: 111 GPSMVAEARTCESQSHKFKGPCASDHNCASVCQTERFSGGHCRGFRRRCFCTTHC* 278
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,530,617
Number of Sequences: 7669
Number of extensions: 72700
Number of successful extensions: 1191
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 163985190
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)