TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular tr... 66 8e-021
>gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 66.1 bits (138), Expect(2) = 8e-021
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1 / +1
Query: 19 YPGGKPMSVHATLWDGSYWATQQGKVKVDWSAAPFAVSYRGYSADAC 159
YP +PM ++ +LW+ WAT+ G K DWS APF SY+G+ D C
Sbjct: 196 YPFSQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGC 336
Score = 48.3 bits (99), Expect(2) = 8e-021
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 226 LDAAEWGTVAWARQNYMHYNYCDDGWRFPQ 315
LD A+W + W RQ Y YNYC+D R+PQ
Sbjct: 409 LDVAQWQRLRWVRQKYTIYNYCNDRKRYPQ 498
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,985,108
Number of Sequences: 7669
Number of extensions: 61929
Number of successful extensions: 1011
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 179735180
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)