TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448753.2.1
         (537 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512850.1|CO512850  s13dSG20E0100003_121626 Glandular tr...   105   7e-024
gb|AF191305.1|AF191305  Medicago sativa glycine-rich RNA bin...   105   7e-024
gb|CO514732.1|CO514732  s13dSG55E0300023_328124 Glandular tr...   100   3e-022

>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 398

 Score =  105 bits (223), Expect = 7e-024
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +2 / +2

                                                                       
Query: 146 KLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITA 325
           + FVGGL++ TD+ +L   F++YG+++++KII DRE+GRSRGFGF+T+         I A
Sbjct: 98  RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 277

                                 
Query: 326 MDGKTLDGRNIRVNHANERTGG 391
           M+G+ LDGRNI VN A  R  G
Sbjct: 278 MNGQDLDGRNITVNQAQSRGXG 343



>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
           partial cds
          Length = 318

 Score =  105 bits (223), Expect = 7e-024
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +2 / +1

                                                                       
Query: 146 KLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITA 325
           + FVGGL++ TD+ +L   F++YG+++++KII DRE+GRSRGFGF+T+         I A
Sbjct: 22  RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDVIEA 201

                                 
Query: 326 MDGKTLDGRNIRVNHANERTGG 391
           M+G+ LDGRNI VN A  R  G
Sbjct: 202 MNGQDLDGRNITVNQAQSRGSG 267



>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 468

 Score = 99.6 bits (211), Expect = 3e-022
 Identities = 40/85 (47%), Positives = 57/85 (67%)
 Frame = +2 / +2

                                                                       
Query: 137 SSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXX 316
           SS+KLFVGGLS+  D+ SL+D F+ +G V E +I+ D++SGR+RGFGF+ ++        
Sbjct: 134 SSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA 313

                                    
Query: 317 ITAMDGKTLDGRNIRVNHANERTGG 391
             AM GK L GR +R+N A E+  G
Sbjct: 314 KDAMGGKALLGRPLRINFALEKPRG 388



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 3,018,788
Number of Sequences: 7669
Number of extensions: 37188
Number of successful extensions: 740
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 127977043
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)