TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular tr... 57 2e-022
>gb|CO516727.1|CO516727 s13dSG74F0500044_446782 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 57.4 bits (119), Expect(3) = 2e-022
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2 / +1
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
YP S+PM ++ +LW+ WAT G DWS APF+ SY+ ++
Sbjct: 196 YPFSQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 324
Score = 43.7 bits (89), Expect(3) = 2e-022
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2 / +1
Query: 448 LDSAEWGTVRWAERNFMRYNYCQDGWRFPQ 359
LD A+W +RW + + YNYC D R+PQ
Sbjct: 409 LDVAQWQRLRWVRQKYTIYNYCNDRKRYPQ 498
Score = 36.3 bits (73), Expect(3) = 2e-022
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADL 647
H Y+++WN I+F VDD+ IR FK L
Sbjct: 97 HGYSVLWNMFQIVFFVDDIPIRVFKNINQL 186
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,338,780
Number of Sequences: 7669
Number of extensions: 67586
Number of successful extensions: 1017
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 194558700
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)