TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441327.2.1
(884 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 116 1e-035
gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular tr... 114 1e-034
gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular tr... 117 1e-034
gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular tr... 112 3e-034
gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular tr... 112 3e-034
gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular tr... 110 2e-033
gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular tr... 107 1e-032
gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular tr... 108 5e-031
gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular tr... 100 9e-031
gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular tr... 108 1e-030
gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular tr... 96 4e-029
gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular tr... 101 1e-028
gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular tr... 95 3e-028
gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular tr... 99 6e-028
gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular tr... 93 2e-027
gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Ka... 89 6e-027
gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular tr... 93 3e-024
gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x va... 78 8e-024
gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x va... 76 3e-023
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 116 bits (248), Expect(2) = 1e-035
Identities = 47/79 (59%), Positives = 59/79 (74%)
Frame = +3 / +2
Query: 36 ASMAGKELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVL 215
A MAG LTLLG W SPFVLR + AL LKG+ Y Y EE+ +KS++LL NPV +KVPVL
Sbjct: 29 AKMAGDSLTLLGFWGSPFVLRVKWALELKGIQYQYVEEDFRNKSDMLLQYNPVYRKVPVL 208
Query: 216 IHHGKPVCESQIIVQYVDE 272
+H GK + ES +I++YVDE
Sbjct: 209 VHDGKSISESLVILEYVDE 265
Score = 47.8 bits (98), Expect(2) = 1e-035
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFYSAWIPVF 389
LP DPY+RA ARFWA + DDK A+I F
Sbjct: 287 LPHDPYERAKARFWAKFADDKCVPAFIATF 376
>gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 114 bits (244), Expect(2) = 1e-034
Identities = 46/80 (57%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LL WASPF +R RIAL+ KG+ + Y EE+L +KS LLL NPV KK+PVLIH+GKP
Sbjct: 85 EVILLDSWASPFGMRLRIALAEKGIKHEYKEEDLSNKSPLLLQMNPVHKKIPVLIHNGKP 264
Query: 234 VCESQIIVQYVDEAFPAAAP 293
+CES + VQY+DE + +P
Sbjct: 265 ICESLVAVQYIDEVWNEKSP 324
Score = 46.9 bits (96), Expect(2) = 1e-034
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 328 LPSDPYQRSRARFWADYVDKKIY 396
>gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 117 bits (250), Expect(2) = 1e-034
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3 / +1
Query: 36 ASMAGKELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVL 215
A MAG LTLLG W SPFVLR + AL LKG+ Y Y EE+ +KS++LL NPV KKVPVL
Sbjct: 31 AKMAGDSLTLLGFWGSPFVLRVKWALELKGVQYQYVEEDFRNKSDMLLQYNPVYKKVPVL 210
Query: 216 IHHGKPVCESQIIVQYVDE 272
+H GK + ES +I++YVDE
Sbjct: 211 VHDGKSISESLVILEYVDE 267
Score = 43.7 bits (89), Expect(2) = 1e-034
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3 / +1
Query: 300 LPSDPYDRAIARFWASYVDDKFYSAW 377
LP DPY+RA ARFWA + DDK A+
Sbjct: 289 LPHDPYERAKARFWAKFADDKCVPAF 366
>gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 112 bits (240), Expect(2) = 3e-034
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +3 / +2
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LL W SPF +R RIAL+ KG+ + Y EE+L +KS LLL NPV KK+PVLIH+GKP
Sbjct: 77 EVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKP 256
Query: 234 VCESQIIVQYVDEAFPAAAP 293
+CES I VQY+DE + +P
Sbjct: 257 ICESLIAVQYIDEVWNEKSP 316
Score = 46.9 bits (96), Expect(2) = 3e-034
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 320 LPSDPYQRSQARFWADYVDKKIY 388
>gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 415
Score = 112 bits (240), Expect(2) = 3e-034
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +3 / +2
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LL W SPF +R RIAL+ KG+ + Y EE+L +KS LLL NPV KK+PVLIH+GKP
Sbjct: 80 EVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKP 259
Query: 234 VCESQIIVQYVDEAFPAAAP 293
+CES I VQY+DE + +P
Sbjct: 260 ICESLIAVQYIDEVWNEKSP 319
Score = 46.9 bits (96), Expect(2) = 3e-034
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 323 LPSDPYQRSQARFWADYVDKKIY 391
>gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 110 bits (235), Expect(2) = 2e-033
Identities = 45/80 (56%), Positives = 58/80 (72%)
Frame = +3 / +3
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LL W SPF +R RIAL+ KG+ + Y EE+L +KS LLL NPV KK+PVLIH+GKP
Sbjct: 93 EVILLDYWVSPFGIRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKP 272
Query: 234 VCESQIIVQYVDEAFPAAAP 293
+CES I QY+DE + +P
Sbjct: 273 ICESLIAAQYIDEVWNDKSP 332
Score = 46.9 bits (96), Expect(2) = 2e-033
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +3
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 336 LPSDPYQRSQARFWADYVDKKIY 404
>gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 107 bits (229), Expect(2) = 1e-032
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +3 / +2
Query: 63 LLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKPVCE 242
LL W SPF +R RIAL+ KG+ + Y EE+L +KS LLL +PV KK+PVLIH+GKP+CE
Sbjct: 104 LLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMDPVHKKIPVLIHNGKPICE 283
Query: 243 SQIIVQYVDEAFPAAAP 293
S I VQY+DE + +P
Sbjct: 284 SLIAVQYIDEVWNDKSP 334
Score = 46.9 bits (96), Expect(2) = 1e-032
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 338 LPSDPYQRSQARFWADYVDKKIY 406
>gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 108 bits (231), Expect(2) = 5e-031
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = +3 / +2
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LLG+ SPFV R +IAL LKG+ Y Y EENL +KS+LLL NP+ KKVPV +H+GKP
Sbjct: 110 EVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKP 289
Query: 234 VCESQIIVQYVDEAF 278
+ ES +I++Y+DE +
Sbjct: 290 LAESLVILEYIDETW 334
Score = 40.5 bits (82), Expect(2) = 5e-031
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3 / +2
Query: 303 PSDPYDRAIARFWASYVDDKFYSA 374
P PY++A+ARFW+ ++DDK A
Sbjct: 353 PQQPYEKALARFWSRFIDDKILPA 424
>gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 100 bits (213), Expect(2) = 9e-031
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3 / +3
Query: 51 KELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGK 230
+ + LLG SPFV R +IAL LKG+ Y ++EENL KSE LL NPV KKVPV +H+ K
Sbjct: 72 EHVKLLGATGSPFVCRVQIALKLKGIEYEFAEENLATKSEQLLKYNPVHKKVPVFVHNEK 251
Query: 231 PVCESQIIVQYVDEAF 278
P+ ES +I++Y+DE +
Sbjct: 252 PISESLVILEYIDEVW 299
Score = 47.8 bits (98), Expect(2) = 9e-031
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3 / +3
Query: 300 LPSDPYDRAIARFWASYVDDKFYSA 374
LPSDP+ RA+ARFW+ ++DDK SA
Sbjct: 315 LPSDPHQRALARFWSKFIDDKIVSA 389
>gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 108 bits (231), Expect(2) = 1e-030
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = +3 / +1
Query: 54 ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
E+ LLG+ SPFV R +IAL LKG+ Y Y EENL +KS+LLL NP+ KKVPV +H+GKP
Sbjct: 109 EVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKP 288
Query: 234 VCESQIIVQYVDEAF 278
+ ES +I++Y+DE +
Sbjct: 289 LAESLVILEYIDETW 333
Score = 39.1 bits (79), Expect(2) = 1e-030
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 303 PSDPYDRAIARFWASYVDDKFYSA 374
P PY +A+ARFW+ ++DDK A
Sbjct: 352 PQQPYGKALARFWSRFIDDKILPA 423
>gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 96.4 bits (204), Expect(2) = 4e-029
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +3 / +3
Query: 51 KELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGK 230
+E+ L GL SPF R IAL LKG+ Y Y EE + S+ ++ NPV KKVPVL+H+GK
Sbjct: 60 EEVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGK 239
Query: 231 PVCESQIIVQYVDEAF 278
P+ ES +I++Y+DE +
Sbjct: 240 PISESLVILEYIDETW 287
Score = 46.4 bits (95), Expect(2) = 4e-029
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 300 LPSDPYDRAIARFWASYVDDK 362
LPSDPY RA+ARFW+ ++DDK
Sbjct: 303 LPSDPYKRALARFWSKFIDDK 365
>gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 101 bits (215), Expect(2) = 1e-028
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = +3 / +2
Query: 42 MAGKELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIH 221
M +++ L+G W SPFV R AL LKG+ Y Y EE++ +K+ LLL NPV KKVPVL+H
Sbjct: 23 MGSQDVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVH 202
Query: 222 HGKPVCESQIIVQYVDEAF 278
KP+ ES II++Y+DE +
Sbjct: 203 AQKPIAESFIILEYIDETW 259
Score = 40.0 bits (81), Expect(2) = 1e-028
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFYSA 374
LP PY+RA+ARFWA + + K +A
Sbjct: 275 LPQHPYERALARFWADFAEQKLLNA 349
>gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 95.0 bits (201), Expect(2) = 3e-028
Identities = 36/76 (47%), Positives = 56/76 (73%)
Frame = +3 / +2
Query: 51 KELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGK 230
+++ LLG+ SPF R +IAL KG+ Y + +E+L +KS+LLL NPV KK+PV +H+ K
Sbjct: 89 EDVKLLGIVGSPFFCRVQIALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEK 268
Query: 231 PVCESQIIVQYVDEAF 278
P+ ES +I++Y+DE +
Sbjct: 269 PISESLVILEYIDEVW 316
Score = 44.6 bits (91), Expect(2) = 3e-028
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFYSA 374
LPSDPY +++ARFW+ ++DDK ++
Sbjct: 332 LPSDPYQKSLARFWSKFIDDKIVTS 406
>gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 98.7 bits (209), Expect(2) = 6e-028
Identities = 40/79 (50%), Positives = 55/79 (69%)
Frame = +3 / +2
Query: 42 MAGKELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIH 221
M +++ L+G W SPFV R AL LKG+ Y Y EE++ +K+ LLL NPV KKVPVL+H
Sbjct: 77 MGSQDVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVH 256
Query: 222 HGKPVCESQIIVQYVDEAF 278
KP+ E II++Y+DE +
Sbjct: 257 AQKPIAELFIILEYIDETW 313
Score = 40.0 bits (81), Expect(2) = 6e-028
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFYSA 374
LP PY+RA+ARFWA + + K +A
Sbjct: 329 LPQHPYERALARFWADFAEQKLLNA 403
>gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 92.7 bits (196), Expect(2) = 2e-027
Identities = 35/76 (46%), Positives = 55/76 (72%)
Frame = +3 / +2
Query: 51 KELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGK 230
+++ LLG+ SPF R + AL KG+ Y + +E+L +KS+LLL NPV KK+PV +H+ K
Sbjct: 89 EDVKLLGIVGSPFFCRVQTALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEK 268
Query: 231 PVCESQIIVQYVDEAF 278
P+ ES +I++Y+DE +
Sbjct: 269 PISESLVILEYIDEVW 316
Score = 44.6 bits (91), Expect(2) = 2e-027
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3 / +2
Query: 300 LPSDPYDRAIARFWASYVDDKFYSA 374
LPSDPY +++ARFW+ ++DDK ++
Sbjct: 332 LPSDPYQKSLARFWSKFIDDKIVTS 406
>gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U62, mRNA sequence
Length = 822
Score = 89.0 bits (188), Expect(2) = 6e-027
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +3 / +1
Query: 72 LWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKPVCESQI 251
L SPF R IAL LKG+ Y Y EE + S+ ++ NPV KKVPVL+H+GKP+ ES +
Sbjct: 1 LVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISESLV 180
Query: 252 IVQYVDEAF 278
I++Y+DE +
Sbjct: 181 ILEYIDETW 207
Score = 46.4 bits (95), Expect(2) = 6e-027
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 300 LPSDPYDRAIARFWASYVDDK 362
LPSDPY RA+ARFW+ ++DDK
Sbjct: 223 LPSDPYKRALARFWSKFIDDK 285
>gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 92.7 bits (196), Expect(2) = 3e-024
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = +3 / +3
Query: 33 LASMAGKELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPV 212
++++ E+ LL A F +R RIAL K Y Y EE+L +KS LLL NP+ KK+PV
Sbjct: 39 ISTIMANEVVLLDGGAXMFGMRVRIALXEKSGKYEYKEEDLRNKSPLLLQMNPIHKKIPV 218
Query: 213 LIHHGKPVCESQIIVQYVDEAF 278
LIH+GKP+ ES II QY+DE +
Sbjct: 219 LIHNGKPIWESAIIGQYIDEVW 284
Score = 33.6 bits (67), Expect(2) = 3e-024
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3 / +3
Query: 294 NFLPSDPYDRAIARFW 341
+F+PS PY+RA ARFW
Sbjct: 297 SFMPSHPYERAQARFW 344
>gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 777
Score = 78.0 bits (164), Expect(2) = 8e-024
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +3 / +1
Query: 144 EENLDDKSELLLSSNPVLKKVPVLIHHGKPVCESQIIVQYVDEAFPAAAP 293
EE+L +KS LLL NPV KK+PVLIH+GKP+CES I VQY+DE + +P
Sbjct: 7 EEDLSNKSPLLLXMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSP 156
Score = 46.9 bits (96), Expect(2) = 8e-024
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 160 LPSDPYQRSQARFWADYVDKKIY 228
>gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 739
Score = 76.2 bits (160), Expect(2) = 3e-023
Identities = 30/50 (60%), Positives = 39/50 (78%)
Frame = +3 / +1
Query: 144 EENLDDKSELLLSSNPVLKKVPVLIHHGKPVCESQIIVQYVDEAFPAAAP 293
+E+L +KS LLL NPV KK+PVLIH+GKP+CES I VQY+DE + +P
Sbjct: 7 KEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSP 156
Score = 46.9 bits (96), Expect(2) = 3e-023
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 300 LPSDPYDRAIARFWASYVDDKFY 368
LPSDPY R+ ARFWA YVD K Y
Sbjct: 160 LPSDPYQRSQARFWADYVDKKIY 228
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,664,163
Number of Sequences: 7669
Number of extensions: 65817
Number of successful extensions: 1957
Number of sequences better than 1.0e-020: 24
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 233470440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)