TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440716.2.1
(774 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular tr... 95 7e-021
>gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 95.5 bits (202), Expect = 7e-021
Identities = 39/78 (50%), Positives = 52/78 (66%)
Frame = -2 / +1
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LPDG E RG VV W Q EVLAHP+V F+TH GWNS++EA+S GVP+V P D
Sbjct: 64 LPDGFLVETIERGKVVKWCLQVEVLAHPSVACFMTHCGWNSSMEAVSLGVPVVTFPSRAD 243
Query: 539 QFGNMRYVCDVWKVGTEL 486
Q N +++ DV+ +G ++
Sbjct: 244 QLTNAKFLADVYGIGIKM 297
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,369,738
Number of Sequences: 7669
Number of extensions: 63031
Number of successful extensions: 747
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 199191050
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)