TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511940.1|CO511940 s13dSG05G1200100_103780 Glandular tr... 233 6e-069
emb|AX776636.1| Sequence 5 from Patent WO02102841 124 1e-061
emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulatio... 124 1e-061
emb|AX776635.1| Sequence 4 from Patent WO02102841 123 7e-060
emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulatio... 123 7e-060
gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular tr... 123 3e-039
gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated... 118 3e-035
gb|CO514123.1|CO514123 s13dSG75E0800055_156908 Glandular tr... 140 4e-034
gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular tr... 68 8e-030
gb|CO514053.1|CO514053 s13dSG72G0600040_156768 Glandular tr... 69 2e-027
gb|CO512977.1|CO512977 s13dSG09B0200013_121880 Glandular tr... 52 1e-025
gb|CO514405.1|CO514405 s13dSG36B1000079_327470 Glandular tr... 67 6e-022
>gb|CO511940.1|CO511940 s13dSG05G1200100_103780 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 233 bits (504), Expect(2) = 6e-069
Identities = 94/153 (61%), Positives = 117/153 (76%)
Frame = -1 / +1
Query: 1049 PVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGHL 870
PVIYRD K SNILL DY +KLSDFGLAK GP GD+THVSTRVMGTYGY AP+Y MTG L
Sbjct: 130 PVIYRDLKCSNILLGEDYHSKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQL 309
Query: 869 TARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALPKLNDKRRLLQIIDPRLEGQY 690
T +SD+YS GV LLEL+TGRK+ID RP++EQ+LV WA P D+RR ++IDP LEGQY
Sbjct: 310 TFKSDIYSIGVALLELITGRKAIDHRRPAKEQNLVAWARPLFRDRRRFSEMIDPLLEGQY 489
Query: 689 SARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
R +++ ++A C+ + P RP+++DVV L
Sbjct: 490 PVRGLYQALAIAAMCVQEQPNMRPVIADVVTAL 588
Score = 117 bits (250), Expect(2) = 2e-029
Identities = 66/123 (53%), Positives = 79/123 (64%)
Frame = +1 / -3
Query: 682 LAEYCPSSLGSMIWRSLLLSLSFGSAQSTRLCSLLGRDLSIDLRPVRSSSRTTPKLYTSL 861
L Y PSS GS+I +LL SL+ G A +TR CSL G S+ PV SS R TP L S
Sbjct: 497 LTGY*PSSNGSIISENLLRSLNNGLAHATRFCSLAGLL*SMAFLPVMSSKRATPML*MSD 318
Query: 862 RAVK*PVITYSGAA*P*VPITRVDTCV*SPSGPSFARPKSDSLAV*SESSRMFDVLKSL* 1041
V *PVI SGA *P VPIT V+T V SP GP+FARPKSD+L *S ++M + L+S
Sbjct: 317 LNVN*PVIA*SGAQ*PYVPITLVETWVLSPIGPTFARPKSDNLE**SSPNKMLEHLRSRY 138
Query: 1042 MTG 1050
+TG
Sbjct: 137 ITG 129
Score = 43.2 bits (88), Expect(2) = 6e-069
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -1 / +1
Query: 1127 PLPWGTRMSIALGAAKGLACLHNAQRPVI 1041
PL W TRM IA GAA+GL LH+ +P +
Sbjct: 49 PLDWNTRMKIAAGAARGLEYLHDKMKPPV 135
Score = 27.6 bits (54), Expect(2) = 2e-029
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1 / -3
Query: 1066 RQASPLAAPSAIDILVPQGNG 1128
+ + PLAAP+AI ILV Q +G
Sbjct: 110 KYSKPLAAPAAIFILVFQSSG 48
>emb|AX776636.1| Sequence 5 from Patent WO02102841
Length = 3339
Score = 124 bits (266), Expect(5) = 1e-061
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = -1 / +3
Query: 1052 RPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGH 873
R VI+RD K+SNILLD AK++DFG +K P+ ++VS V GT GY PEY T
Sbjct: 2391 RSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQ 2570
Query: 872 LTARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALP 750
L+ +SDV+SFGVVLLE+++GR+ ++ RP E SLV+WA P
Sbjct: 2571 LSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKP 2693
Score = 68.0 bits (142), Expect(5) = 1e-061
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = -1 / +3
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENH 1149
VAVKV + QG E+ E+N L ++H NLV L+GYC E D ++LVY FM GSL +
Sbjct: 2106 VAVKVRSSTSTQGTXEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDR 2285
Query: 1148 LF 1143
L+
Sbjct: 2286 LY 2291
Score = 39.6 bits (80), Expect(5) = 1e-061
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 1124 LPWGTRMSIALGAAKGLACLH 1062
L W TR+SIALGAA+GLA LH
Sbjct: 2316 LDWPTRLSIALGAARGLAYLH 2378
Score = 38.2 bits (77), Expect(5) = 1e-061
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1 / +3
Query: 722 QIIDPRLEGQYSARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
+I+DP ++G Y A A + +A CL RP M D+V L
Sbjct: 2718 EIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 2849
Score = 36.8 bits (74), Expect(5) = 1e-061
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -1 / +3
Query: 1409 VLGEGGFGTVYKGYIDENVRVGLK 1338
++GEGGFG+VY+G +D+ V +K
Sbjct: 2046 LIGEGGFGSVYRGTLDDGQEVAVK 2117
>emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulation receptor kinase (nork gene), wild
type allele DMI2
Length = 3339
Score = 124 bits (266), Expect(5) = 1e-061
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = -1 / +3
Query: 1052 RPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGH 873
R VI+RD K+SNILLD AK++DFG +K P+ ++VS V GT GY PEY T
Sbjct: 2391 RSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQ 2570
Query: 872 LTARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALP 750
L+ +SDV+SFGVVLLE+++GR+ ++ RP E SLV+WA P
Sbjct: 2571 LSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKP 2693
Score = 68.0 bits (142), Expect(5) = 1e-061
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = -1 / +3
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENH 1149
VAVKV + QG E+ E+N L ++H NLV L+GYC E D ++LVY FM GSL +
Sbjct: 2106 VAVKVRSSTSTQGTXEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDR 2285
Query: 1148 LF 1143
L+
Sbjct: 2286 LY 2291
Score = 39.6 bits (80), Expect(5) = 1e-061
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 1124 LPWGTRMSIALGAAKGLACLH 1062
L W TR+SIALGAA+GLA LH
Sbjct: 2316 LDWPTRLSIALGAARGLAYLH 2378
Score = 38.2 bits (77), Expect(5) = 1e-061
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1 / +3
Query: 722 QIIDPRLEGQYSARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
+I+DP ++G Y A A + +A CL RP M D+V L
Sbjct: 2718 EIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 2849
Score = 36.8 bits (74), Expect(5) = 1e-061
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -1 / +3
Query: 1409 VLGEGGFGTVYKGYIDENVRVGLK 1338
++GEGGFG+VY+G +D+ V +K
Sbjct: 2046 LIGEGGFGSVYRGTLDDGQEVAVK 2117
>emb|AX776635.1| Sequence 4 from Patent WO02102841
Length = 3378
Score = 123 bits (263), Expect(5) = 7e-060
Identities = 52/99 (52%), Positives = 70/99 (70%)
Frame = -1 / +1
Query: 1046 VIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLT 867
VI+RD K+SNILLD AK++DFG +K P+ ++VS V GT GY PEY T L+
Sbjct: 2416 VIHRDLKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLS 2595
Query: 866 ARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALP 750
+SDV+SFGVVLLE+++GR+ ++ RP E SLV+WA P
Sbjct: 2596 EKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKP 2712
Score = 69.3 bits (145), Expect(5) = 7e-060
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = -1 / +1
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENH 1149
VAVKV + QG +E+ E+N L ++H NLV L+GYC E D ++LVY FM GSL +
Sbjct: 2125 VAVKVRSSTSTQGTKEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDR 2304
Query: 1148 LF 1143
L+
Sbjct: 2305 LY 2310
Score = 38.2 bits (77), Expect(5) = 7e-060
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1 / +1
Query: 722 QIIDPRLEGQYSARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
+I+DP ++G Y A A + +A CL RP M D+V L
Sbjct: 2737 EIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 2868
Score = 37.7 bits (76), Expect(5) = 7e-060
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -1 / +1
Query: 1124 LPWGTRMSIALGAAKGLACLHNAQRPVI 1041
L W TR+SIALGA +GLA LH P +
Sbjct: 2335 LDWPTRLSIALGAPRGLA*LHTFPGPSV 2418
Score = 32.7 bits (65), Expect(5) = 7e-060
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +1
Query: 1400 EGGFGTVYKGYIDENVRVGLK 1338
EGGFG+VY+G +D+ V +K
Sbjct: 2074 EGGFGSVYRGTLDDGQEVAVK 2136
>emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulation receptor kinase (nork gene),
mutant allele nn1
Length = 3337
Score = 123 bits (263), Expect(5) = 7e-060
Identities = 52/99 (52%), Positives = 70/99 (70%)
Frame = -1 / +1
Query: 1046 VIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLT 867
VI+RD K+SNILLD AK++DFG +K P+ ++VS V GT GY PEY T L+
Sbjct: 2395 VIHRDLKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLS 2574
Query: 866 ARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALP 750
+SDV+SFGVVLLE+++GR+ ++ RP E SLV+WA P
Sbjct: 2575 EKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKP 2691
Score = 69.3 bits (145), Expect(5) = 7e-060
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = -1 / +1
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENH 1149
VAVKV + QG +E+ E+N L ++H NLV L+GYC E D ++LVY FM GSL +
Sbjct: 2104 VAVKVRSSTSTQGTKEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDR 2283
Query: 1148 LF 1143
L+
Sbjct: 2284 LY 2289
Score = 38.2 bits (77), Expect(5) = 7e-060
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1 / +1
Query: 722 QIIDPRLEGQYSARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
+I+DP ++G Y A A + +A CL RP M D+V L
Sbjct: 2716 EIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVREL 2847
Score = 37.7 bits (76), Expect(5) = 7e-060
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -1 / +1
Query: 1124 LPWGTRMSIALGAAKGLACLHNAQRPVI 1041
L W TR+SIALGA +GLA LH P +
Sbjct: 2314 LDWPTRLSIALGAPRGLA*LHTFPGPSV 2397
Score = 32.7 bits (65), Expect(5) = 7e-060
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +1
Query: 1400 EGGFGTVYKGYIDENVRVGLK 1338
EGGFG+VY+G +D+ V +K
Sbjct: 2053 EGGFGSVYRGTLDDGQEVAVK 2115
>gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 123 bits (264), Expect(2) = 3e-039
Identities = 52/86 (60%), Positives = 66/86 (76%)
Frame = -1 / +1
Query: 1058 AQRPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMT 879
AQ P+I+RD KTSNILLDS + AK+SDFGL+ GPE +++H+S GT GY PEY
Sbjct: 352 AQPPIIHRDIKTSNILLDSKWVAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRL 531
Query: 878 GHLTARSDVYSFGVVLLELLTGRKSI 801
+LT++SDVYSFGV LLELL+G K+I
Sbjct: 532 QYLTSKSDVYSFGVXLLELLSGYKAI 609
Score = 53.8 bits (111), Expect(2) = 3e-039
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = -1 / +1
Query: 1280 WLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFR 1140
++ E+ L +L H NLVKL+G+ + + R+LVYE+M GSL +HL +
Sbjct: 124 FVNELESLSRLHHKNLVKLLGFYEDKNGRILVYEYMNNGSLNDHLHK 264
>gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated receptor-like kinase
mRNA, complete cds
Length = 1798
Score = 118 bits (253), Expect(3) = 3e-035
Identities = 47/104 (45%), Positives = 70/104 (67%)
Frame = -1 / +1
Query: 1049 PVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYGYAAPEYVMTGHL 870
P+I+RD K SNIL+ + AK++DFG A+ + TH+ST+V GT GY PEY+ T L
Sbjct: 922 PIIHRDIKASNILISENLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQL 1101
Query: 869 TARSDVYSFGVVLLELLTGRKSIDKSRPSREQSLVDWALPKLND 738
T +SDVYSFGV+L+E++TGR ++ + E+ + WA+ L +
Sbjct: 1102 TEKSDVYSFGVLLVEMMTGRHPVEPKKKIDERVTIRWAMKMLKN 1233
Score = 44.1 bits (90), Expect(3) = 3e-035
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -1 / +1
Query: 1460 FTLFELETITKSFRVDYVLGEGGFGTVYKGYIDENVRVGLK 1338
FT E+ T F D +GEGGFGTVY+G +++ V +K
Sbjct: 526 FTFEEIYKSTAKFSSDNQIGEGGFGTVYRGKLNDGTIVAVK 648
Score = 27.6 bits (54), Expect(3) = 3e-035
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1 / +1
Query: 689 SARAAHKSCSLAFYCLSQNPKARPLMSDVVETL 591
S + K LAF CL+ + +RP M + E L
Sbjct: 1282 SIKVVKKVFKLAFQCLAPSIHSRPAMKNCAEVL 1380
>gb|CO514123.1|CO514123 s13dSG75E0800055_156908 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 244
Score = 140 bits (301), Expect = 4e-034
Identities = 55/79 (69%), Positives = 66/79 (83%)
Frame = -1 / +2
Query: 1085 AKGLACLHNAQRPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGDQTHVSTRVMGTYG 906
A+GLA LH++ + VIYRDFK SNILLD +Y AK+SDFGLAK GP G +HV+TR+MGTYG
Sbjct: 5 ARGLAFLHSSDKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGGDSHVTTRIMGTYG 184
Query: 905 YAAPEYVMTGHLTARSDVY 849
YAAPEY+ TGHL +SDVY
Sbjct: 185 YAAPEYMATGHLYVKSDVY 241
>gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 68.4 bits (143), Expect(5) = 8e-030
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -1 / +1
Query: 947 DQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREQSL 768
D THVST GT GY PEY LT +SD YSFGVVL+EL++ +++D +R + +L
Sbjct: 406 DVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDAYSFGVVLVELISSLRAVDITRHRNDVNL 585
Query: 767 VD 762
+
Sbjct: 586 AN 591
Score = 39.6 bits (80), Expect(5) = 8e-030
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = -1 / +1
Query: 1046 VIYRDFKTSNILLDSDYTAKLSDFGLAK 963
V++RD K++NILLD + K++DFGL++
Sbjct: 310 VMHRDVKSNNILLDEKFHVKVADFGLSR 393
Score = 33.1 bits (66), Expect(5) = 8e-030
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 1151 HLFRKTATPLPWGTRMSIALGAAKGLACLH 1062
H R ++ LPW R+ IAL A+ LA LH
Sbjct: 211 HGDRSSSCLLPWSVRLDIALETAEALAYLH 300
Score = 32.7 bits (65), Expect(5) = 8e-030
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1 / +1
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLV 1185
VAVK + + +++ EV L +LRH NLV L G + LL+
Sbjct: 25 VAVKRHYESNFKRVAQFMNEVEILARLRHKNLVTLYGCTSKHSRELLL 168
Score = 24.0 bits (46), Expect(5) = 8e-030
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 1193 LLVYEFMFRGSLENHL 1146
LLVYE++ G++ +HL
Sbjct: 163 LLVYEYISNGTVADHL 210
>gb|CO514053.1|CO514053 s13dSG72G0600040_156768 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 68.9 bits (144), Expect(3) = 2e-027
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = -1 / +1
Query: 1328 VAVKVLNKDGHQGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHR 1194
VA+K LN G QGH+EWL EV L + HPNLVKL+GYC D R
Sbjct: 322 VAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGER 456
Score = 47.8 bits (98), Expect(3) = 2e-027
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -1 / +1
Query: 1196 RLLVYEFMFRGSLENHLFRKTATPLPWGT 1110
RLLVYEFM SLENHLF +T LPW T
Sbjct: 466 RLLVYEFMPNRSLENHLFSRTLPVLPWKT 552
Score = 39.1 bits (79), Expect(3) = 2e-027
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1 / +1
Query: 1460 FTLFELETITKSFRVDYVLGEGGFGTVYKGYI 1365
FT EL T F +GEGGFG+VYKG I
Sbjct: 193 FTFQELRDATNGFNRMLKIGEGGFGSVYKGSI 288
>gb|CO512977.1|CO512977 s13dSG09B0200013_121880 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 52.4 bits (108), Expect(4) = 1e-025
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -1 / +1
Query: 1286 REWLTEVNCLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRK 1137
RE+ TEV +G+LRHPN+ L Y D +LL+Y+++ GSL + + K
Sbjct: 1 REFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLASAIHGK 150
Score = 43.7 bits (89), Expect(4) = 1e-025
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +1
Query: 908 GYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSI 801
GY APE + + + DVYS+GV+LLE++TGR I
Sbjct: 457 GYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPI 564
Score = 35.4 bits (71), Expect(4) = 1e-025
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1 / +1
Query: 1136 TATPLPWGTRMSIALGAAKGLACLH 1062
T TPL W R+ I G AKGL LH
Sbjct: 163 TFTPLTWSDRLKIMKGTAKGLVYLH 237
Score = 35.0 bits (70), Expect(4) = 1e-025
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1 / +1
Query: 1043 IYRDFKTSNILLDSDYTAKLSDFGLAK 963
++ D K SNILL D T +SDFGL +
Sbjct: 259 VHGDLKPSNILLGHDMTPYISDFGLGR 339
>gb|CO514405.1|CO514405 s13dSG36B1000079_327470 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 67.0 bits (140), Expect(3) = 6e-022
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +3
Query: 1295 QGHREWLTEVNCLGQLRHPNLVKLIGYCCEDDHR 1194
QGH+ W+ EVN LG ++HPNLV+L+GYC EDD R
Sbjct: 354 QGHKGWINEVNLLGVIKHPNLVRLVGYCAEDDER 455
Score = 38.6 bits (78), Expect(3) = 6e-022
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -1 / +2
Query: 1562 DRKHTCMSSDISDPSTPRKVEDAKNISIYNDVIAFTLFELETITKSFRVDYVLGEGGFGT 1383
D + + SD D S + + + N + F+ +L+ T+ F ++GEGGFG+
Sbjct: 83 DTRRSEYDSDSRDFSDTLGLHEFLSQRRANHLHLFSFSDLKIATRGFNRALLIGEGGFGS 262
Query: 1382 VYKG 1371
VY+G
Sbjct: 263 VYRG 274
Score = 31.3 bits (62), Expect(3) = 6e-022
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1 / +3
Query: 1196 RLLVYEFMFRGSLENHL 1146
RLLVYEFM SLE+HL
Sbjct: 465 RLLVYEFMSNKSLEDHL 515
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,492,402
Number of Sequences: 7669
Number of extensions: 201361
Number of successful extensions: 1477
Number of sequences better than 1.0e-020: 15
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 460121660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)