TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular tr... 101 3e-047
gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular tr... 111 2e-046
gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular tr... 88 6e-033
gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular tr... 127 2e-030
>gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 101 bits (215), Expect(3) = 3e-047
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = -1 / +3
Query: 748 GGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLIS 569
GG C+PPNHHF L F+ IA ++AGI+P+ YRRV+C R GG+RF++NG +F VL++
Sbjct: 342 GGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCKRRGGIRFTINGHSYFNLVLVT 521
Query: 568 NVGGA 554
NVGGA
Sbjct: 522 NVGGA 536
Score = 92.3 bits (195), Expect(3) = 3e-047
Identities = 34/64 (53%), Positives = 43/64 (67%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y +D +GGACG+G+L GYG T LSTALF G +CG CYE+KCV D ++C PG
Sbjct: 126 YGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCNPG 305
Query: 811 TSIV 800
+ IV
Sbjct: 306 SIIV 317
Score = 28.6 bits (56), Expect(3) = 3e-047
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAP 773
SI+VTATNFC P
Sbjct: 306 SIIVTATNFCPP 341
>gb|CO513205.1|CO513205 s13dSG24B0800061_129574 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 111 bits (236), Expect(2) = 2e-046
Identities = 44/79 (55%), Positives = 56/79 (70%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI+VTATNFC PN LP + GG C+PP HF L F +IA +KAGI+P+ YRRV C R
Sbjct: 356 SILVTATNFCPPNNALPNNNGGWCSPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRR 535
Query: 628 EGGVRFSVNGRHFFFTVLI 572
GG+RF++NG +F VL+
Sbjct: 536 RGGIRFTINGHSYFNLVLV 592
Score = 90.4 bits (191), Expect(2) = 2e-046
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -1 / +2
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y +D +GGACG+G+L GYG T LSTALF G +CG C+E++C D K+CLPG
Sbjct: 176 YGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDRKWCLPG 355
Query: 811 TSIV 800
+ +V
Sbjct: 356 SILV 367
>gb|CO515743.1|CO515743 s13dSG77C1100086_419635 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 538
Score = 87.7 bits (185), Expect(2) = 6e-033
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y D +GGACG+G+L GYG T LSTALF G +CG CYE++C +D ++C PG
Sbjct: 208 YGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMRCNDDPRWCKPG 387
Query: 811 TSIV 800
+ IV
Sbjct: 388 SIIV 399
Score = 68.4 bits (143), Expect(2) = 6e-033
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMP 659
SI+VTATNFC PN LP + GG CNPP HF + ++ +IA ++AGI+P
Sbjct: 388 SIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAYLQIAEYRAGIVP 537
>gb|CO515120.1|CO515120 s13dSG40E0200019_399105 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 314
Score = 127 bits (273), Expect = 2e-030
Identities = 51/103 (49%), Positives = 67/103 (65%)
Frame = -1 / +3
Query: 613 FSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFE 434
F++NG +F VL++NVGGAGDV SV IKG+ W M RNWGQ W N + GQ LS
Sbjct: 6 FTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSVV 185
Query: 433 LSSSDGKALTSFNVVPKDWEYGKTYTGKQFLL*RMSATRSAYS 305
+++ +G ++ SFNV P W +G+TYTG+QFL * AYS
Sbjct: 186 VTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*LTL*MHLAYS 314
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,588,617
Number of Sequences: 7669
Number of extensions: 113532
Number of successful extensions: 1094
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 317905146
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)