TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2430946.2.2
         (3838 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO516105.1|CO516105  s13dSG65C1200098_445538 Glandular tr...   281   2e-090
gb|DQ122795.1|  Medicago sativa clone M22 putative cellulose...   127   9e-054

>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 529

 Score =  281 bits (608), Expect(2) = 2e-090
 Identities = 108/141 (76%), Positives = 124/141 (87%)
 Frame = -3 / +1

                                                                        
Query: 1208 ALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKF 1029
            ALGSVEI  S+HCPIWYGY G LKLLER +YIN++VYP TS+PLI YC LPAICLLT KF
Sbjct: 7    ALGSVEIFFSKHCPIWYGYGGGLKLLERFSYINSVVYPWTSLPLIVYCTLPAICLLTGKF 186

                                                                        
Query: 1028 IIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQG 849
            I+PEISNYA + F+ LF SI ATGILE++W GVGI+DWWRNEQFWVIGG S+H FA+FQG
Sbjct: 187  IVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQG 366

                                 
Query: 848  LLKVLAGIDTNFTVTSKASDE 786
            LLKVLAG+DTNFTVTSKA+D+
Sbjct: 367  LLKVLAGVDTNFTVTSKAADD 429




 Score =  196 bits (422), Expect(2) = 2e-053
 Identities = 88/138 (63%), Positives = 99/138 (71%)
 Frame = +1 / -3

                                                                        
Query: 796  AFEVTVKLVSIPANTFSRPWNTAKRWAEVPPITQNCSFLHQSSMPTPLHLSSNIPVAKME 975
            AF+VTVK VS PA T S+PW  AK+  E PPITQNCSFLHQSS+PTP H  S IPVA M+
Sbjct: 419  AFDVTVKFVSTPAKTLSKPWKRAKKCDEAPPITQNCSFLHQSSIPTPPHCISRIPVAAMD 240

                                                                        
Query: 976  AKRRMKNIPA*LLISGMINLLVRRQIAGSTQ*AISGMDVIGYTIVLM*ASLSKSFNRPL* 1155
             KR M    A*LLISG IN  VRR +AG  Q* I+G +V GYT   M*   S +FN P *
Sbjct: 239  MKRAMNTRLA*LLISGTINFPVRRHMAGRVQ*TINGREVQGYTTEFM*EKRSNNFNPPP* 60

                              
Query: 1156 PYQIGQCLLSRISTDPRA 1209
            PYQIGQCLL +IST+PRA
Sbjct: 59   PYQIGQCLLKKISTEPRA 6




 Score =  100 bits (213), Expect = 1e-021
 Identities = 51/142 (35%), Positives = 83/142 (58%)
 Frame = +3 / -2

                                                                        
Query: 786  LIRCL*GNCEVGINPSQHFQQTLEHCEEMGRGATNNPKLLISPPIFNANTAPSKLQYTSG 965
            +I C * N EV ++ S + +QTLE  ++M    +N+PKL I PPI  +NT P  L+ T  
Sbjct: 429  IIGCF*CNSEVCVDTS*NLEQTLEKGKKM**STSNHPKLFIPPPIIYSNTTPLHLKDTGC 250

                                                                        
Query: 966  KNGGEKKNEEHPSIIANLRNDKFIGKEADSGKHTIGNKRNGCDWIYNSVDVSQPLQKLQS 1145
             +G E+ +E    I+A LRN+KF G++      T+ N+  G   I++ + V +  Q+LQ 
Sbjct: 249  CDGYEEGHEHKTCIVAYLRNNKFSGQKTYGR*STVDNQWEGSPRIHD*IYVGKTFQQLQP 70

                                  
Query: 1146 SIVTIPDRTMSTKQNFH*PKSP 1211
            + V +P+ TM  +++ +  KSP
Sbjct: 69   TTVAVPNWTMFAEKDLNRTKSP 4




 Score = 68.4 bits (143), Expect(2) = 2e-090
 Identities = 22/35 (62%), Positives = 33/35 (94%)
 Frame = -3 / +1

                                              
Query: 788 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGI 684
           +DG+F+ELY+FKWTSLLIPP T+L++N+VG++ G+
Sbjct: 424 DDGEFSELYIFKWTSLLIPPMTLLIMNIVGVIVGV 528




 Score = 29.9 bits (59), Expect(2) = 2e-053
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1 / -3

                                   
Query: 688 PATIPTRLMTRTVVGGMSKLVHLN 759
           P   PT  M  +V+GG++  VHLN
Sbjct: 524 PTITPTIFMINSVIGGINSEVHLN 453



>gb|DQ122795.1| Medicago sativa clone M22 putative cellulose synthase catalytic
            subunit mRNA, partial cds
          Length = 512

 Score =  127 bits (271), Expect(2) = 9e-054
 Identities = 47/93 (50%), Positives = 69/93 (74%)
 Frame = -3 / +2

                                                                        
Query: 1070 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWV 891
            YC LPA+ L + +FI+  +S    +F + +  ++    +LE++WSG+ + DWWRNEQFW+
Sbjct: 2    YCFLPALSLFSGQFIVQSLSVTFLVFLLGITVTLCLLALLEIKWSGITLHDWWRNEQFWL 181

                                             
Query: 890  IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS 792
            IGGTSAH  AV QGLLKV+AG+D +FT+TSK++
Sbjct: 182  IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSA 280




 Score =  100 bits (213), Expect(2) = 9e-054
 Identities = 33/74 (44%), Positives = 52/74 (70%)
 Frame = -3 / +2

                                                                       
Query: 791 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 612
           D + +FA+LY+ KW+ L++PP T++++N + +  G++  + S +  W  L G LFFS WV
Sbjct: 290 DGEDEFADLYLVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGLFFSFWV 469

                         
Query: 611 ILHLYPFLKGLMGR 570
           + HLYPF KGL+GR
Sbjct: 470 LCHLYPFAKGLLGR 511



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 35,343,180
Number of Sequences: 7669
Number of extensions: 535240
Number of successful extensions: 2501
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 1103618208
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)