TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513216.1|CO513216 s13dSG24C0900066_129596 Glandular tr... 159 7e-040
>gb|CO513216.1|CO513216 s13dSG24C0900066_129596 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 159 bits (342), Expect = 7e-040
Identities = 55/96 (57%), Positives = 76/96 (79%)
Frame = +2 / +3
Query: 887 MGCMKSGMVISEEGQQWYEPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSY 1066
MGCMKSG V SE+ +WYEPEWWKFGD K+YFRHASG ++++S+ LA++I+IN + L++Y
Sbjct: 6 MGCMKSGEVFSEQNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRSILRTY 185
Query: 1067 AHDDISVGSWMMGLNATYVDDDRLCCSSSRQEKICS 1174
AHDD+S GSW +GL+ +VD+ + CCSS IC+
Sbjct: 186 AHDDVSAGSWFIGLDVKHVDEAKFCCSSWSTGAICA 293
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,343,386
Number of Sequences: 7669
Number of extensions: 170440
Number of successful extensions: 3129
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 378119780
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)