TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.3
(2175 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular tr... 164 5e-041
>gb|CO516976.1|CO516976 s13dSG81D0100010_468498 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 299
Score = 164 bits (352), Expect = 5e-041
Identities = 65/74 (87%), Positives = 69/74 (93%)
Frame = +2 / +3
Query: 92 KMVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISKPRIEAWNSDTLPIYEPGLDDVVK 271
KMVKICCIGAGYVGGPTMAVIALKCP+IEV VVDI+ PRI AWNSD LPIYEPGLDDVVK
Sbjct: 78 KMVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDIATPRINAWNSDHLPIYEPGLDDVVK 257
Query: 272 QCRGRNLFFSTDVE 313
+C G+NLFFSTDVE
Sbjct: 258 KCTGKNLFFSTDVE 299
Score = 132 bits (282), Expect = 2e-031
Identities = 56/73 (76%), Positives = 65/73 (89%)
Frame = -1 / -2
Query: 312 STSVLKKRFLPLHCFTTSSRPGS*IGRVSLFQASMRGLEMSTTTTSMSGHLRAMTAMVGP 133
STSVLKKRF P+H FTTSSRPGS IG+ SLFQA +RG+ +STT TS+SGH +A+TA+VGP
Sbjct: 298 STSVLKKRFFPVHFFTTSSRPGSYIGKWSLFQALIRGVAISTTATSISGHFKAITAIVGP 119
Query: 132 PT*PAPMQQIFTI 94
PT*PAPMQQIFTI
Sbjct: 118 PT*PAPMQQIFTI 80
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 17,498,451
Number of Sequences: 7669
Number of extensions: 256462
Number of successful extensions: 1945
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 45
effective length of database: 903,463
effective search space used: 613451377
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)