TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405118.2.1
(1669 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF083332.1|AF083332 Medicago sativa cinnamyl-alcohol deh... 219 e-126
emb|Z19573.1|MSCIALDHA M.sativa encoding cinnamyl alcohol d... 219 e-126
gb|L46857.1|ALFCAD1B Medicago sativa cinnamyl-alcohol dehyd... 219 e-120
gb|AF083333.1|AF083333 Medicago sativa cinnamyl-alcohol deh... 87 1e-069
gb|L46856.1|ALFCAD1A Medicago sativa cinnamyl-alcohol dehyd... 87 1e-069
gb|CO512656.1|CO512656 s13dSG19A0700049_121238 Glandular tr... 102 8e-042
gb|CO515617.1|CO515617 s13dSG47F0300031_418293 Glandular tr... 90 8e-035
gb|CO513877.1|CO513877 s13dSG73F0500043_156416 Glandular tr... 90 7e-034
gb|CO516989.1|CO516989 s13dSG81E1000081_468524 Glandular tr... 92 3e-032
gb|CO511976.1|CO511976 s13dSG07C1100086_103852 Glandular tr... 90 1e-031
gb|CO512794.1|CO512794 s13dSG88G0900068_121514 Glandular tr... 87 6e-030
>gb|AF083332.1|AF083332 Medicago sativa cinnamyl-alcohol dehydrogenase (MsaCad2) mRNA,
complete cds
Length = 1324
Score = 219 bits (472), Expect(3) = e-126
Identities = 97/157 (61%), Positives = 112/157 (71%)
Frame = -2 / +3
Query: 954 VKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXDYIIDTVPVHH 775
VKVAKA+GHHVTVISSS KK+ EA++ LGAD YLV DYIIDTVPV H
Sbjct: 648 VKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGH 827
Query: 774 PLEPYXXXXXXXXXXXXXXVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDK 595
PLEPY VI PL FV+PMVMLGRK+ITGSF+GS+ ET E+L+F +K
Sbjct: 828 PLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEK 1007
Query: 594 GLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 484
GLTS IE+V M Y+N+A ERLE+NDVRYRFVVDV GS
Sbjct: 1008 GLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGS 1118
Score = 160 bits (345), Expect(3) = e-126
Identities = 60/77 (77%), Positives = 66/77 (85%)
Frame = -2 / +3
Query: 1248 CCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQA 1069
CC+ C C + +EQYCNKKIWSYNDVYTDG+ TQGGFA + VV+QKFVVKIP GLAPEQ
Sbjct: 354 CCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQV 533
Query: 1068 APLLCAGVTVYSPLKHF 1018
APLLCAGVTVYSPL HF
Sbjct: 534 APLLCAGVTVYSPLSHF 584
Score = 124 bits (266), Expect(4) = 9e-051
Identities = 54/70 (77%), Positives = 58/70 (82%)
Frame = +2 / -1
Query: 1004 GVVSPKCFSGLYTVTPAHSSGAACSGARPAGIFTTNFWSTTMVEANPPCVGRPSV*TSLY 1183
GV SPKC SGLYTVTPAH++GA CSGA P+GIFTTNF STT+ A PP V PSV*TSL
Sbjct: 598 GVFSPKCESGLYTVTPAHNNGATCSGANPSGIFTTNFCSTTVDSAKPP*VIFPSV*TSL* 419
Query: 1184 DQIFLLQYCS 1213
DQIFLLQYCS
Sbjct: 418 DQIFLLQYCS 389
Score = 108 bits (230), Expect(3) = e-126
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = -2 / +3
Query: 1530 ASERKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYP 1351
A+ER VG AA+D +G L+PY+YTLRNTGP+DV +K+ YCG+CH+D+HQ KN LG S YP
Sbjct: 72 AAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYP 251
Query: 1350 M 1348
M
Sbjct: 252 M 254
Score = 59.3 bits (123), Expect(4) = 9e-051
Identities = 33/63 (52%), Positives = 36/63 (57%)
Frame = +2 / -1
Query: 1349 IGYFEAPRWFLAWWMSVWQIPQ*STFTTTSSGPVFLRV*E*GERCPVASLAAHPTTFLSD 1528
IG + PR FL W S Q PQ* TSSGPVFLRV G R P S AA+PT LS
Sbjct: 253 IG*LDMPRSFLIW*RSE*QTPQ**ILM*TSSGPVFLRVYVYGVRIPEGSFAANPTVVLSA 74
Query: 1529 ARL 1537
A +
Sbjct: 73 ASM 65
Score = 51.9 bits (107), Expect(4) = 9e-051
Identities = 28/57 (49%), Positives = 29/57 (50%)
Frame = +2 / -1
Query: 782 TGTVXXXXXXXXXXXXXXXXXXLTRYASAPRWSIASARFLDDELITVTWWPMALATF 952
TGTV LTR SAPR S AS FL +ELITVTW P A ATF
Sbjct: 820 TGTVSMI*SSESAASCIPTVSELTR*LSAPRSSSASFFFLSEELITVTW*PNAFATF 650
Score = 26.7 bits (52), Expect(4) = 9e-051
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1 / -3
Query: 583 GGEPLVDAELKHLSGLVDAADEAPRDGLPPQHHH 684
G L+ +L+HL L+ A ++A + LPP H H
Sbjct: 1019 GS*TLLFPKLQHLLCLLHAPNKASSN*LPP*HDH 918
>emb|Z19573.1|MSCIALDHA M.sativa encoding cinnamyl alcohol dehydrogenase
Length = 1321
Score = 219 bits (472), Expect(3) = e-126
Identities = 97/157 (61%), Positives = 112/157 (71%)
Frame = -2 / +3
Query: 954 VKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXDYIIDTVPVHH 775
VKVAKA+GHHVTVISSS KK+ EA++ LGAD YLV DYIIDTVPV H
Sbjct: 672 VKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGH 851
Query: 774 PLEPYXXXXXXXXXXXXXXVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDK 595
PLEPY VI PL FV+PMVMLGRK+ITGSF+GS+ ET E+L+F +K
Sbjct: 852 PLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEK 1031
Query: 594 GLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 484
GLTS IE+V M Y+N+A ERLE+NDVRYRFVVDV GS
Sbjct: 1032 GLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGS 1142
Score = 160 bits (345), Expect(3) = e-126
Identities = 60/77 (77%), Positives = 66/77 (85%)
Frame = -2 / +3
Query: 1248 CCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQA 1069
CC+ C C + +EQYCNKKIWSYNDVYTDG+ TQGGFA + VV+QKFVVKIP GLAPEQ
Sbjct: 378 CCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQV 557
Query: 1068 APLLCAGVTVYSPLKHF 1018
APLLCAGVTVYSPL HF
Sbjct: 558 APLLCAGVTVYSPLSHF 608
Score = 124 bits (266), Expect(4) = 1e-051
Identities = 54/70 (77%), Positives = 58/70 (82%)
Frame = +2 / -1
Query: 1004 GVVSPKCFSGLYTVTPAHSSGAACSGARPAGIFTTNFWSTTMVEANPPCVGRPSV*TSLY 1183
GV SPKC SGLYTVTPAH++GA CSGA P+GIFTTNF STT+ A PP V PSV*TSL
Sbjct: 622 GVFSPKCESGLYTVTPAHNNGATCSGANPSGIFTTNFCSTTVDSAKPP*VIFPSV*TSL* 443
Query: 1184 DQIFLLQYCS 1213
DQIFLLQYCS
Sbjct: 442 DQIFLLQYCS 413
Score = 108 bits (230), Expect(3) = e-126
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = -2 / +3
Query: 1530 ASERKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYP 1351
A+ER VG AA+D +G L+PY+YTLRNTGP+DV +K+ YCG+CH+D+HQ KN LG S YP
Sbjct: 96 AAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYP 275
Query: 1350 M 1348
M
Sbjct: 276 M 278
Score = 59.3 bits (123), Expect(4) = 1e-051
Identities = 33/63 (52%), Positives = 36/63 (57%)
Frame = +2 / -1
Query: 1349 IGYFEAPRWFLAWWMSVWQIPQ*STFTTTSSGPVFLRV*E*GERCPVASLAAHPTTFLSD 1528
IG + PR FL W S Q PQ* TSSGPVFLRV G R P S AA+PT LS
Sbjct: 277 IG*LDMPRSFLIW*RSE*QTPQ**ILM*TSSGPVFLRVYVYGVRIPEGSFAANPTVVLSA 98
Query: 1529 ARL 1537
A +
Sbjct: 97 ASM 89
Score = 51.9 bits (107), Expect(4) = 1e-051
Identities = 28/57 (49%), Positives = 29/57 (50%)
Frame = +2 / -1
Query: 782 TGTVXXXXXXXXXXXXXXXXXXLTRYASAPRWSIASARFLDDELITVTWWPMALATF 952
TGTV LTR SAPR S AS FL +ELITVTW P A ATF
Sbjct: 844 TGTVSMI*SSESAASCIPTVSELTR*LSAPRSSSASFFFLSEELITVTW*PNAFATF 674
Score = 29.5 bits (58), Expect(4) = 1e-051
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -3
Query: 583 GGEPLVDAELKHLSGLVDAADEAPRDGLPPQHHH 684
GG L+ +L+HL L+ A ++A + LPP H H
Sbjct: 1043 GG*ALLFPKLQHLLCLLHAPNKASSN*LPP*HDH 942
>gb|L46857.1|ALFCAD1B Medicago sativa cinnamyl-alcohol dehydrogenase (cad1) mRNA, partial
cds
Length = 1201
Score = 219 bits (472), Expect(3) = e-120
Identities = 97/157 (61%), Positives = 112/157 (71%)
Frame = -2 / +3
Query: 954 VKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXDYIIDTVPVHH 775
VKVAKA+GHHVTVISSS KK+ EA++ LGAD YLV DYIIDTVPV H
Sbjct: 525 VKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGH 704
Query: 774 PLEPYXXXXXXXXXXXXXXVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDK 595
PLEPY VI PL FV+PMVMLGRK+ITGSF+GS+ ET E+L+F +K
Sbjct: 705 PLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEK 884
Query: 594 GLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 484
GLTS IE+V M Y+N+A ERLE+NDVRYRFVVDV GS
Sbjct: 885 GLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGS 995
Score = 160 bits (345), Expect(3) = e-120
Identities = 60/77 (77%), Positives = 66/77 (85%)
Frame = -2 / +3
Query: 1248 CCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQA 1069
CC+ C C + +EQYCNKKIWSYNDVYTDG+ TQGGFA + VV+QKFVVKIP GLAPEQ
Sbjct: 231 CCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQV 410
Query: 1068 APLLCAGVTVYSPLKHF 1018
APLLCAGVTVYSPL HF
Sbjct: 411 APLLCAGVTVYSPLSHF 461
Score = 124 bits (266), Expect(4) = 2e-047
Identities = 54/70 (77%), Positives = 58/70 (82%)
Frame = +2 / -1
Query: 1004 GVVSPKCFSGLYTVTPAHSSGAACSGARPAGIFTTNFWSTTMVEANPPCVGRPSV*TSLY 1183
GV SPKC SGLYTVTPAH++GA CSGA P+GIFTTNF STT+ A PP V PSV*TSL
Sbjct: 475 GVFSPKCESGLYTVTPAHNNGATCSGANPSGIFTTNFCSTTVDSAKPP*VIFPSV*TSL* 296
Query: 1184 DQIFLLQYCS 1213
DQIFLLQYCS
Sbjct: 295 DQIFLLQYCS 266
Score = 87.7 bits (185), Expect(3) = e-120
Identities = 29/43 (67%), Positives = 37/43 (86%)
Frame = -2 / +3
Query: 1476 SPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
+PY+YTLRNTGP+DV +K+ YCG+CH+D+HQ KN LG S YPM
Sbjct: 3 TPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPM 131
Score = 51.9 bits (107), Expect(4) = 2e-047
Identities = 28/57 (49%), Positives = 29/57 (50%)
Frame = +2 / -1
Query: 782 TGTVXXXXXXXXXXXXXXXXXXLTRYASAPRWSIASARFLDDELITVTWWPMALATF 952
TGTV LTR SAPR S AS FL +ELITVTW P A ATF
Sbjct: 697 TGTVSMI*SSESAASCIPTVSELTR*LSAPRSSSASFFFLSEELITVTW*PNAFATF 527
Score = 37.7 bits (76), Expect(4) = 2e-047
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1 / -3
Query: 1318 HLADHLVPRDHRIL*SPEVVLGLVDVRVADPAVEHLHHHIFRAC 1449
+L +H +P +HRI+ +++ LV +R+ + V + +I R+C
Sbjct: 161 YLTNHFMPGNHRIIGHAKIIFDLVKIRMTNSTVMNFDVNIIRSC 30
Score = 26.7 bits (52), Expect(4) = 2e-047
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1 / -3
Query: 583 GGEPLVDAELKHLSGLVDAADEAPRDGLPPQHHH 684
G L+ +L+HL L+ A ++A + LPP H H
Sbjct: 896 GS*TLLFPKLQHLLCLLHAPNKASSN*LPP*HDH 795
>gb|AF083333.1|AF083333 Medicago sativa cinnamyl-alcohol dehydrogenase (MsaCad1) mRNA,
complete cds
Length = 1390
Score = 87.2 bits (184), Expect(5) = 1e-069
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -2 / +3
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP+ ++ R G +DV VK+LYCG+CH+D+H KN G + YP+
Sbjct: 135 KAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPV 305
Score = 83.5 bits (176), Expect(5) = 1e-069
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = -2 / +3
Query: 708 EPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLE 529
+PL ++ GRK I GS IG + ET E+L FC +T+ IE++KM +N A+ERL
Sbjct: 942 KPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLH 1121
Query: 528 RNDVRYRFVVDVAGS 484
+ DV+YRFV+DVA S
Sbjct: 1122 KADVKYRFVIDVANS 1166
Score = 64.3 bits (134), Expect(5) = 1e-069
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = -2 / +3
Query: 1161 GRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHF 1018
G T GG++ +VV Q++VV+ P L + APLLCAG+TVYSP+K++
Sbjct: 489 GTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYY 632
Score = 60.2 bits (125), Expect(5) = 1e-069
Identities = 29/64 (45%), Positives = 35/64 (54%)
Frame = -2 / +3
Query: 954 VKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXDYIIDTVPVHH 775
+K KA G VTVIS+S K EA+D LGAD++LV DYIIDT+ H
Sbjct: 696 IKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAH 875
Query: 774 PLEP 763
L P
Sbjct: 876 SLMP 887
Score = 39.1 bits (79), Expect(5) = 1e-069
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2 / +3
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQG 1144
C+ C C ++EQYC K +++YN Y R G
Sbjct: 408 CQTCENCNQDLEQYCPKPVFTYNSPYKGTRTYGG 509
>gb|L46856.1|ALFCAD1A Medicago sativa cinnamyl-alcohol dehydrogenase (cad1) mRNA, complete
cds
Length = 1390
Score = 87.2 bits (184), Expect(5) = 1e-069
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -2 / +3
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP+ ++ R G +DV VK+LYCG+CH+D+H KN G + YP+
Sbjct: 135 KAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPV 305
Score = 83.5 bits (176), Expect(5) = 1e-069
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = -2 / +3
Query: 708 EPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLE 529
+PL ++ GRK I GS IG + ET E+L FC +T+ IE++KM +N A+ERL
Sbjct: 942 KPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLH 1121
Query: 528 RNDVRYRFVVDVAGS 484
+ DV+YRFV+DVA S
Sbjct: 1122 KADVKYRFVIDVANS 1166
Score = 64.3 bits (134), Expect(5) = 1e-069
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = -2 / +3
Query: 1161 GRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHF 1018
G T GG++ +VV Q++VV+ P L + APLLCAG+TVYSP+K++
Sbjct: 489 GTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYY 632
Score = 60.2 bits (125), Expect(5) = 1e-069
Identities = 29/64 (45%), Positives = 35/64 (54%)
Frame = -2 / +3
Query: 954 VKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXDYIIDTVPVHH 775
+K KA G VTVIS+S K EA+D LGAD++LV DYIIDT+ H
Sbjct: 696 IKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAH 875
Query: 774 PLEP 763
L P
Sbjct: 876 SLMP 887
Score = 39.1 bits (79), Expect(5) = 1e-069
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2 / +3
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQG 1144
C+ C C ++EQYC K +++YN Y R G
Sbjct: 408 CQTCENCNQDLEQYCPKPVFTYNSPYKGTRTYGG 509
>gb|CO512656.1|CO512656 s13dSG19A0700049_121238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 102 bits (217), Expect(2) = 8e-042
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = -2 / +2
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAA 1066
CR C C N+E YC + + + Y DG T GG++ +MVVD+ F V IP GL E AA
Sbjct: 323 CRSCQNCAENLESYCPRFTATCSGKYRDGTTTYGGYSDSMVVDEHFAVHIPDGLPLEAAA 502
Query: 1065 PLLCAGVTVYSPLKHF 1018
PLLCAG+TVYSPL++F
Sbjct: 503 PLLCAGITVYSPLRYF 550
Score = 84.0 bits (177), Expect(2) = 8e-042
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = -2 / +2
Query: 1509 GWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
GWAARD +G L P++++ R T +DV +K+L+CGICHTD+H KN G S YP+
Sbjct: 59 GWAARDQSGLLFPFNFSRRETNEKDVSLKILFCGICHTDLHMIKNEWGISTYPL 220
>gb|CO515617.1|CO515617 s13dSG47F0300031_418293 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 89.5 bits (189), Expect(2) = 8e-035
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -2 / +3
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP++++ R TG +DV K+LYCGICH+D+ AKN G S YP+
Sbjct: 114 KAFGWAARDTSGVLSPFNFSRRETGEKDVAFKILYCGICHSDVCMAKNEWGISTYPL 284
Score = 73.5 bits (154), Expect(2) = 8e-035
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = -2 / +3
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAA 1066
CR C C N+E YC K + + DG T GG++ ++V D+ ++V IP GL E AA
Sbjct: 387 CRSCQNCVDNLENYCPKYTTTIGAKHRDGTITYGGYSDSLVADENYMVHIPDGLPLEAAA 566
Query: 1065 PLLCA 1051
PLLCA
Sbjct: 567 PLLCA 581
>gb|CO513877.1|CO513877 s13dSG73F0500043_156416 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 539
Score = 89.5 bits (189), Expect(2) = 7e-034
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -2 / +2
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP++++ R TG +DV K+LYCGICH+D+ AKN G S YP+
Sbjct: 74 KAFGWAARDTSGVLSPFNFSRRETGEKDVAFKILYCGICHSDVCMAKNEWGISTYPL 244
Score = 70.3 bits (147), Expect(2) = 7e-034
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = -2 / +2
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAA 1066
CR C C N+E YC + + DG T GG++ ++V D+ +VV IP GL E AA
Sbjct: 347 CRSCQNCVDNLENYCPTYTTTIGAKHRDGTITYGGYSDSLVADENYVVHIPDGLPLEAAA 526
Query: 1065 PLLC 1054
PLLC
Sbjct: 527 PLLC 538
>gb|CO516989.1|CO516989 s13dSG81E1000081_468524 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 497
Score = 91.8 bits (194), Expect(2) = 3e-032
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -2 / +3
Query: 1521 RKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
+K GWAARD +G LSP++++ R TG DV KVLYCGICH+D+H KN G S YP+
Sbjct: 69 KKAFGWAARDPSGVLSPFNFSRRETGETDVAFKVLYCGICHSDLHMVKNEWGTSIYPL 242
Score = 62.5 bits (130), Expect(2) = 3e-032
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -2 / +3
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIP 1093
CR C C N+E YC K + + Y DG T GG++ +MV D+ FV++IP
Sbjct: 345 CRSCQDCNDNLENYCPKFVVTCGAKYRDGTVTYGGYSDSMVADEHFVIRIP 497
>gb|CO511976.1|CO511976 s13dSG07C1100086_103852 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 575
Score = 89.5 bits (189), Expect(2) = 1e-031
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -2 / +3
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP++++ R TG +DV K+LYCGICH+D+ AKN G S YP+
Sbjct: 120 KAFGWAARDTSGVLSPFNFSRRETGEKDVAFKILYCGICHSDVCMAKNEWGISTYPL 290
Score = 62.9 bits (131), Expect(2) = 1e-031
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = -2 / +3
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAA 1066
CR C C N+E YC + + DG T GG++ ++V D+ +VV IP GL E AA
Sbjct: 393 CRSCQNCVDNLENYCPAYTTTIGARHRDGTTTYGGYSDSLVADENYVVHIPDGLPLEAAA 572
Query: 1065 P 1063
P
Sbjct: 573 P 575
>gb|CO512794.1|CO512794 s13dSG88G0900068_121514 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 87.2 bits (184), Expect(2) = 6e-030
Identities = 31/57 (54%), Positives = 41/57 (71%)
Frame = -2 / +1
Query: 1518 KVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPM 1348
K GWAARD +G LSP++++ R TG +DV K+LYCGICH+D+ AKN G YP+
Sbjct: 112 KAFGWAARDTSGVLSPFNFSRRETGEKDVAFKILYCGICHSDVCMAKNEWGIPTYPL 282
Score = 59.3 bits (123), Expect(2) = 6e-030
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = -2 / +1
Query: 1245 CRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAA 1066
CR C C N+E YC + + DG T GG++ ++V D+ +VV IP GL E AA
Sbjct: 385 CRSCQNCVDNLENYCPTYTTTIGAKHRDGTITYGGYSDSLVADENYVVHIPDGLPLEAAA 564
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,340,790
Number of Sequences: 7669
Number of extensions: 99401
Number of successful extensions: 1042
Number of sequences better than 1.0e-020: 11
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 465588452
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)