TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular tr... 81 1e-025
gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular tr... 79 5e-025
gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular tr... 80 1e-024
gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular tr... 78 7e-023
gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular tr... 81 6e-021
gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular tr... 81 6e-021
gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular tr... 81 6e-021
>gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 81.3 bits (171), Expect(3) = 1e-025
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -1 / +2
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GPADSPY GG F++ I P YPF+PPK+ F TKV+HPNI+S
Sbjct: 167 HWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 313
Score = 34.1 bits (68), Expect(3) = 1e-025
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +2
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 308 NSNGSICLDILKEQW 352
Score = 33.1 bits (66), Expect(3) = 1e-025
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1 / +2
Query: 501 DDPQDAVVAQQYLRDYPTFAATARYWTEAFA 409
DDP +A Y D + ATAR WT+ +A
Sbjct: 419 DDPLVPEIAHMYKTDRTKYEATARSWTQKYA 511
>gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 79.4 bits (167), Expect(3) = 5e-025
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = -1 / +1
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GPADSPY GG F++ I P YPF+PPK F TKV+HPNI+S
Sbjct: 178 HWQATIMGPADSPYTGGVFLVSIHFPPDYPFKPPKGAFRTKVFHPNINS 324
Score = 34.1 bits (68), Expect(3) = 5e-025
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 319 NSNGSICLDILKEQW 363
Score = 33.1 bits (66), Expect(3) = 5e-025
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1 / +1
Query: 501 DDPQDAVVAQQYLRDYPTFAATARYWTEAFA 409
DDP +A Y D + ATAR WT+ +A
Sbjct: 430 DDPLVPEIAHMYKTDRAKYEATARSWTQKYA 522
>gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 80.3 bits (169), Expect(3) = 1e-024
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = -1 / +1
Query: 771 GANISHLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
G ++ H TI GPADSPY GG F++ I P YP +PPK+ F TKV+HPNI+S
Sbjct: 163 GEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPSKPPKVSFRTKVFHPNINS 324
Score = 34.1 bits (68), Expect(3) = 1e-024
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 319 NSNGSICLDILKEQW 363
Score = 30.9 bits (61), Expect(3) = 1e-024
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1 / +1
Query: 501 DDPQDAVVAQQYLRDYPTFAATARYWTEAFA 409
DDP +A Y D + TAR WT+ +A
Sbjct: 430 DDPLVPDIAHMYKTDKAKYETTARSWTQKYA 522
>gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 78.0 bits (164), Expect(3) = 7e-023
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = -1 / +1
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GP DSP+ GG F++ I P YPF+PPK+ F TKV+HPNI+S
Sbjct: 187 HWQATIMGPGDSPFAGGVFLVQIHFPPDYPFKPPKVSFRTKVFHPNINS 333
Score = 34.1 bits (68), Expect(3) = 7e-023
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 328 NSNGSICLDILKEQW 372
Score = 27.2 bits (53), Expect(3) = 7e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 501 DDPQDAVVAQQYLRDYPTFAATARYWT 421
DDP +A Y + ATAR WT
Sbjct: 439 DDPLVPEIAHMYKSXQAKYGATARSWT 519
>gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 81.3 bits (171), Expect(2) = 6e-021
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -1 / +3
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GPADSPY GG F++ I P YPF+PPK+ F TKV+HPNI+S
Sbjct: 291 HWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 437
Score = 34.1 bits (68), Expect(2) = 6e-021
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 432 NSNGSICLDILKEQW 476
>gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 490
Score = 81.3 bits (171), Expect(2) = 6e-021
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -1 / +1
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GPADSPY GG F++ I P YPF+PPK+ F TKV+HPNI+S
Sbjct: 193 HWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 339
Score = 34.1 bits (68), Expect(2) = 6e-021
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 334 NSNGSICLDILKEQW 378
>gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 418
Score = 81.3 bits (171), Expect(2) = 6e-021
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -1 / +3
Query: 756 HLTGTIAGPADSPYEGGTFVIDIRLPGGYPFEPPKMQFITKVWHPNISS 610
H TI GPADSPY GG F++ I P YPF+PPK+ F TKV+HPNI+S
Sbjct: 168 HWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 314
Score = 34.1 bits (68), Expect(2) = 6e-021
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 612 SQNGAICLDILKDQW 568
+ NG+ICLDILK+QW
Sbjct: 309 NSNGSICLDILKEQW 353
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,137,845
Number of Sequences: 7669
Number of extensions: 94579
Number of successful extensions: 1051
Number of sequences better than 1.0e-020: 8
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 248995071
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)