TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405010.2.1
(1644 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515272.1|CO515272 s13dSG96H0900080_399409 Glandular tr... 221 3e-058
>gb|CO515272.1|CO515272 s13dSG96H0900080_399409 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 221 bits (476), Expect = 3e-058
Identities = 91/111 (81%), Positives = 97/111 (87%)
Frame = -3 / +1
Query: 1462 DLDGNSVAPLTICMIGAGGFIGSHLCEKLMAETRHVVLAVDVYCDKIRHLVDPAPPHLAG 1283
DLDGN + PLTICMIGAGGFIGSHLCEKLM+ET H VLA+DVY DKI+HL++P G
Sbjct: 163 DLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETSHKVLALDVYSDKIKHLLEPESLPWNG 342
Query: 1282 RISFHRLNIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFID 1130
RI FHRLNIKNDSRLEGL KMADL INLAAICTPADYNTRPLDTIYSNFID
Sbjct: 343 RIHFHRLNIKNDSRLEGLTKMADLVINLAAICTPADYNTRPLDTIYSNFID 495
Score = 152 bits (326), Expect = 1e-037
Identities = 77/108 (71%), Positives = 84/108 (77%)
Frame = +3 / -3
Query: 1131 SMKLL*MVSRGRVL*SAGVQIAARLMVRSAILMSPSSLESFLMLRRWKEMRPARCGGAGS 1310
SMKLL*+VSRGRVL*SAGVQIAAR + RSAIL+ PSSLESFL+LRR K MRP + +GS
Sbjct: 494 SMKLL*IVSRGRVL*SAGVQIAARFITRSAILVRPSSLESFLILRR*K*MRPFQGSDSGS 315
Query: 1311 TRWRILSQYTSTARTTWRVSAMSFSQRWEPMKPPAPIMQMVRGATELP 1454
R ILS TS ART VS MSFSQR EPMKPPAPIMQ+VRG P
Sbjct: 314 KRCLILSL*TSKARTL*EVSDMSFSQR*EPMKPPAPIMQIVRGLIGFP 171
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,489,321
Number of Sequences: 7669
Number of extensions: 164510
Number of successful extensions: 1077
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 458299396
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)