TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2306434.2.3
         (3914 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO516105.1|CO516105  s13dSG65C1200098_445538 Glandular tr...   336   1e-092
gb|DQ122795.1|  Medicago sativa clone M22 putative cellulose...   132   8e-049

>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 529

 Score =  336 bits (728), Expect = 1e-092
 Identities = 129/174 (74%), Positives = 146/174 (83%)
 Frame = -1 / +1

                                                                        
Query: 1193 ALGSVEIFFSKHCPLWYGYGGGLKFLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKF 1014
            ALGSVEIFFSKHCP+WYGYGGGLK LERFSYINS+VYPWTS+PL+ YCTLPAICLLTGKF
Sbjct: 7    ALGSVEIFFSKHCPIWYGYGGGLKLLERFSYINSVVYPWTSLPLIVYCTLPAICLLTGKF 186

                                                                        
Query: 1013 ITPELTNVASIWFMALFICISVTGILEMRWSGVAIDDWWRNEQFWVIGGVSAHLFAVFQG 834
            I PE++N AS+ FMALFI I+ TGILEM+W GV IDDWWRNEQFWVIGG S+H FA+FQG
Sbjct: 187  IVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQG 366

                                                                  
Query: 833  LLKVLAGIDTSFTVTSKAGDDEEFSELYTFKWXXXXXXXXXXXXLNFIGVVAGI 672
            LLKVLAG+DT+FTVTSKA DD EFSELY FKW            +N +GV+ G+
Sbjct: 367  LLKVLAGVDTNFTVTSKAADDGEFSELYIFKWTSLLIPPMTLLIMNIVGVIVGV 528




 Score =  219 bits (472), Expect = 2e-057
 Identities = 97/171 (56%), Positives = 109/171 (63%)
 Frame = +1 / -3

                                                                        
Query: 676  PATTPMKFXXXXXXXXXXXXXHLNVYXXXXXXXXPAFDVTVKLVSMPASTFSRPWNTANR 855
            P  TP  F             HLN+          AFDVTVK VS PA T S+PW  A +
Sbjct: 524  PTITPTIFMINSVIGGINSEVHLNM*SSENSPSSAAFDVTVKFVSTPAKTLSKPWKRAKK 345

                                                                        
Query: 856  CAETPPMTQNCSFLHQSSMATPLHLISRMPVTEMQMKSAMNQILATLVSSGVINFPVSRQ 1035
            C E PP+TQNCSFLHQSS+ TP H ISR+PV  M MK AMN  LA L+ SG INFPV R 
Sbjct: 344  CDEAPPITQNCSFLHQSSIPTPPHCISRIPVAAMDMKRAMNTRLA*LLISGTINFPVRRH 165

                                                               
Query: 1036 MAGKVQ*ARRGMDVQG*TMELI*ENLSRNFSPPPYPYQSGQCLLKKISTDP 1188
            MAG+VQ*   G +VQG T E +*E  S NF+PPP PYQ GQCLLKKIST+P
Sbjct: 164  MAGRVQ*TINGREVQGYTTEFM*EKRSNNFNPPP*PYQIGQCLLKKISTEP 12




 Score =  100 bits (212), Expect = 2e-021
 Identities = 53/152 (34%), Positives = 80/152 (52%)
 Frame = -3 / +3

                                                                        
Query: 1194 GPWVCRNFLQQALPTLVRVRRRAKIPGKVFLYQLHRLSLDVHSSPGLLYLACHLPAHGEV 1015
            G W C +  QQ L  LVR+R   ++ G  FL++  R+SLD      LLY   H+ +  ++
Sbjct: 6    GSWFC*DLFQQTLSNLVRLRWWVEVVGTFFLHKFSRVSLDFPPIDCLLYSTGHMSSDRKI 185

                                                                        
Query: 1014 YHTRAYQCGQYLVHGTFHLHLRDRHPGNEVEWRGHRRLVEERAVLGHRRRFGASVRGVPG 835
            Y +   Q  +  VHG  H+H  +R+P + + W  +R LVEE  VLG  R F       P 
Sbjct: 186  YCS*DKQLCKSCVHGPLHIHRSNRYP*DAMGWCWNR*LVEE*TVLGDWRCFITFFCPFPR 365

                                            
Query: 834  PAEGARRHRHELHRDVEGRGRRGVLGAVHVQV 739
             A+G    RH+LH  ++      +LGA+H+Q+
Sbjct: 366  FAQGFSWCRHKLHCYIKSSR*WRILGALHIQM 461



>gb|DQ122795.1| Medicago sativa clone M22 putative cellulose synthase catalytic
            subunit mRNA, partial cds
          Length = 512

 Score =  132 bits (283), Expect(2) = 8e-049
 Identities = 48/97 (49%), Positives = 70/97 (72%)
 Frame = -1 / +2

                                                                        
Query: 1055 YCTLPAICLLTGKFITPELTNVASIWFMALFICISVTGILEMRWSGVAIDDWWRNEQFWV 876
            YC LPA+ L +G+FI   L+    ++ + + + + +  +LE++WSG+ + DWWRNEQFW+
Sbjct: 2    YCFLPALSLFSGQFIVQSLSVTFLVFLLGITVTLCLLALLEIKWSGITLHDWWRNEQFWL 181

                                                 
Query: 875  IGGVSAHLFAVFQGLLKVLAGIDTSFTVTSKAGDDEE 765
            IGG SAH  AV QGLLKV+AG+D SFT+TSK+   E+
Sbjct: 182  IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPED 292




 Score = 78.5 bits (165), Expect(2) = 8e-049
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = -1 / +2

                                                                       
Query: 773 DEEFSELYTFKWXXXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIV 594
           ++EF++LY  KW            +N I +  G++  + + +  W  L G LFF+FWV+ 
Sbjct: 296 EDEFADLYLVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGLFFSFWVLC 475

                       
Query: 593 HLYPFLKGLVGR 558
           HLYPF KGL+GR
Sbjct: 476 HLYPFAKGLLGR 511



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 30,620,439
Number of Sequences: 7669
Number of extensions: 433781
Number of successful extensions: 2908
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 1126908852
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)