TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2193041.2.1
         (877 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY205233.1|  Medicago sativa 60S ribosomal protein mRNA, ...   310   1e-085

>gb|AY205233.1| Medicago sativa 60S ribosomal protein mRNA, partial cds
          Length = 544

 Score =  310 bits (672), Expect = 1e-085
 Identities = 131/163 (80%), Positives = 147/163 (90%)
 Frame = +3 / +1

                                                                       
Query: 72  MGIDLVAGGRNKKTKRTAPKSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 251
           MGIDL AGG++KKTKRTAPKS+D+YLKLLVKLYRFLVRRT+SNFN VILKRLFMSK N+P
Sbjct: 52  MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTESNFNKVILKRLFMSKVNKP 231

                                                                       
Query: 252 PLSMRRLVRFMEGKGDQIAVIVGTVTDDKRISEVPAMKVCALRFTETARARIINAGGECL 431
           PLS+ RL+R+ +GK  +IAV+VG VTDD R+ EVPA+KV ALRFTE ARARI  AGGECL
Sbjct: 232 PLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPAIKVTALRFTEKARARIEKAGGECL 411

                                                      
Query: 432 TFDQLALRAPLGQNTVLLRGPKNAREAVRHFGPAPGVPHSHTK 560
           TFDQLAL+APLGQNTVLLRGPKNAREAV+HFG APGVPHS TK
Sbjct: 412 TFDQLALKAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSSTK 540




 Score =  170 bits (366), Expect(2) = 2e-048
 Identities = 85/124 (68%), Positives = 88/124 (70%)
 Frame = -1 / -3

                                                                       
Query: 559 LVWL*GTPGAGPKCLTASLAFLGPLSRTVFCPSGARSASWSKVRHSPPALMILALAVSVN 380
           LV L GTPGA PKCLTAS AFLGPL RTVFCP GA  AS SKVRHSPPA  ILALA SVN
Sbjct: 539 LVLLCGTPGARPKCLTASRAFLGPLRRTVFCPKGALRAS*SKVRHSPPAFSILALAFSVN 360

                                                                       
Query: 379 LSAQTFIAGTSLILLSSVTVPTITAI*SPFPSMNLTRRRIESGGRLVLLMKRRLRITALK 200
           L A T IAGTS  L+SSVT PT TAI   FP +       +SGG L LLMK  LRIT LK
Sbjct: 359 LRAVTLIAGTS*TLMSSVTAPTTTAILPSFPLV*RINLESDSGGLLTLLMKSLLRITLLK 180

               
Query: 199 LLFV 188
           LL V
Sbjct: 179 LLSV 168




 Score = 37.3 bits (75), Expect(2) = 2e-048
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -1 / -3

                                
Query: 133 DLGAVRLVFLLRPPATRSIPM 71
           D GAVRLVFL  PPA +SIPM
Sbjct: 113 DFGAVRLVFLDLPPAFKSIPM 51



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,881,149
Number of Sequences: 7669
Number of extensions: 64832
Number of successful extensions: 644
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 230691030
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)