TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.22
(333 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA... 44 1e-005
gb|CO511799.1|CO511799 s13dSG02B0900077_103498 Glandular tr... 27 1.2
gb|CO515523.1|CO515523 s13dSG52G0600052_418105 Glandular tr... 27 1.2
gb|CO512947.1|CO512947 s13dSG86G0100004_121820 Glandular tr... 26 2.3
gb|CO514294.1|CO514294 s13dSG76G0500036_157250 Glandular tr... 19 3.2
gb|CO514739.1|CO514739 s13dSG55E1000083_328138 Glandular tr... 19 3.3
gb|CO511960.1|CO511960 s13dSG07B0400041_103820 Glandular tr... 19 3.5
gb|CO513766.1|CO513766 s13dSG82A0300017_156194 Glandular tr... 19 3.6
gb|CO515845.1|CO515845 s13dSG54G0400033_421229 Glandular tr... 19 3.8
gb|CO511785.1|CO511785 s13dSG02A0700053_103470 Glandular tr... 19 3.8
gb|CO516389.1|CO516389 s13dSG27B0200013_446106 Glandular tr... 19 3.8
gb|CO514604.1|CO514604 s13dSG42G0600052_327868 Glandular tr... 19 4.1
gb|CO516530.1|CO516530 s13dSG57B0800063_446388 Glandular tr... 19 4.1
gb|CO511932.1|CO511932 s13dSG05G0300024_103764 Glandular tr... 19 4.1
gb|CO514856.1|CO514856 s13dSG56B1000089_328372 Glandular tr... 19 4.1
gb|CO514288.1|CO514288 s13dSG76F1100091_157238 Glandular tr... 19 4.2
gb|CO511792.1|CO511792 s13dSG02B0200025_103484 Glandular tr... 25 4.3
gb|CO512966.1|CO512966 s13dSG86H1200096_121858 Glandular tr... 25 4.3
gb|CO516312.1|CO516312 s13dSG69H0900078_445952 Glandular tr... 25 4.3
gb|AJ888512.1|AJ888512 AJ888512 Medicago sativa subsp. x va... 25 4.3
emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene 25 4.3
emb|X13289.1|MSNOD25R Medicago sativa mRNA for nodulin-25 (... 25 4.3
gb|M91078.1|ALFMSPRP Medicago sativa (cultivar Iroquois) Ms... 25 4.3
gb|AY027892.1| Medicago sativa PII protein (GLNB) mRNA, com... 25 4.3
gb|CO516262.1|CO516262 s13dSG69D0100010_445852 Glandular tr... 19 4.5
gb|CO514273.1|CO514273 s13dSG76E0700051_157208 Glandular tr... 19 4.7
gb|CO516211.1|CO516211 s13dSG67G0500040_445750 Glandular tr... 19 4.7
gb|CO516532.1|CO516532 s13dSG57B1000079_446392 Glandular tr... 19 4.7
gb|CO516756.1|CO516756 s13dSG94A0600038_446840 Glandular tr... 19 4.7
gb|CO516820.1|CO516820 s13dSG98B0500042_446968 Glandular tr... 19 4.7
gb|CO513890.1|CO513890 s13dSG73G0600040_156442 Glandular tr... 19 5.2
gb|CO516765.1|CO516765 s13dSG94B0500042_446858 Glandular tr... 19 5.2
gb|CO515701.1|CO515701 s13dSG60G0900072_419551 Glandular tr... 19 5.5
gb|CO512380.1|CO512380 s13dSG80C0400022_114274 Glandular tr... 19 5.9
gb|CO513982.1|CO513982 s13dSG71H1000080_156626 Glandular tr... 19 5.9
gb|L36120.1|ALFMSA3S Medicago sativa proline-rich protein m... 24 5.9
emb|X88845.1|MSNUM1GEN M.sativa mRNA for nuM1 protein 24 5.9
gb|CO513395.1|CO513395 s13dSG38E0900067_129954 Glandular tr... 24 5.9
gb|DQ122825.1| Medicago sativa clone M9 syntaxin of plants ... 24 5.9
gb|CO513185.1|CO513185 s13dSG23H0500044_129534 Glandular tr... 19 6.0
gb|CO512455.1|CO512455 s13dSG100B080006_114424 Glandular tr... 19 6.1
gb|CO513336.1|CO513336 s13dSG37G1000072_129836 Glandular tr... 19 6.1
gb|CO514811.1|CO514811 s13dSG59E0500039_328282 Glandular tr... 19 6.1
gb|CO514676.1|CO514676 s13dSG46G0400036_328012 Glandular tr... 19 6.1
gb|AJ248325.1|AJ248325 AJ248325 Medicago sativa subsp. x va... 24 8.2
gb|CO512335.1|CO512335 s13dSG68G0500036_114184 Glandular tr... 24 8.2
gb|CO512466.1|CO512466 s13dSG100D020001_114446 Glandular tr... 24 8.2
gb|CO512734.1|CO512734 s13dSG88A0500033_121394 Glandular tr... 24 8.2
gb|CO513842.1|CO513842 s13dSG73C0500034_156346 Glandular tr... 24 8.2
gb|CO514898.1|CO514898 s13dSG56G0100008_328456 Glandular tr... 24 8.2
gb|CO516225.1|CO516225 s13dSG67H1100096_445778 Glandular tr... 24 8.2
gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular tr... 24 8.2
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 225
Score = 43.7 bits (89), Expect = 1e-005
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGF 70
G+NV+GY+AWS D++EW AG+
Sbjct: 148 GANVKGYYAWSFSDSYEWVAGY 213
>gb|CO511799.1|CO511799 s13dSG02B0900077_103498 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 517
Score = 26.7 bits (52), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2 / +1
Query: 125 CSACSYCCGRRRQCHNVR*SR 63
C+ CS R++Q H+VR SR
Sbjct: 145 CATCSLLSERQQQTHSVRDSR 207
>gb|CO515523.1|CO515523 s13dSG52G0600052_418105 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 509
Score = 26.7 bits (52), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2 / +1
Query: 125 CSACSYCCGRRRQCHNVR*SR 63
C+ CS R++Q H+VR SR
Sbjct: 190 CATCSLLSERQQQTHSVRDSR 252
>gb|CO512947.1|CO512947 s13dSG86G0100004_121820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 516
Score = 25.8 bits (50), Expect = 2.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -2 / +2
Query: 143 TWQTPSCSACSYCCGRRRQC 84
TW+ C+ C + CG C
Sbjct: 410 TWKAACCAVCCWWCGDTGGC 469
>gb|CO514294.1|CO514294 s13dSG76G0500036_157250 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 394
Score = 19.4 bits (36), Expect(3) = 3.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 81 KSSSLLHLLP 52
Score = 18.5 bits (34), Expect(3) = 3.2
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 179 CSFCC 165
Score = 16.6 bits (30), Expect(3) = 3.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 253 LSTYDPTPFCSS 218
>gb|CO514739.1|CO514739 s13dSG55E1000083_328138 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 404
Score = 19.4 bits (36), Expect(3) = 3.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 3.3
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 3.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO511960.1|CO511960 s13dSG07B0400041_103820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 19.4 bits (36), Expect(3) = 3.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 34 KSSSLLHLLP 5
Score = 18.5 bits (34), Expect(3) = 3.5
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 132 CSFCC 118
Score = 16.6 bits (30), Expect(3) = 3.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 206 LSTYDPTPFCSS 171
>gb|CO513766.1|CO513766 s13dSG82A0300017_156194 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 427
Score = 19.4 bits (36), Expect(3) = 3.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 3.6
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 183 CSFCC 169
Score = 16.6 bits (30), Expect(3) = 3.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 257 LSTYDPTPFCSS 222
>gb|CO515845.1|CO515845 s13dSG54G0400033_421229 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 439
Score = 19.4 bits (36), Expect(3) = 3.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 3.8
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO511785.1|CO511785 s13dSG02A0700053_103470 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 19.4 bits (36), Expect(3) = 3.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 95 KSSSLLHLLP 66
Score = 18.5 bits (34), Expect(3) = 3.8
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 193 CSFCC 179
Score = 16.6 bits (30), Expect(3) = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 267 LSTYDPTPFCSS 232
>gb|CO516389.1|CO516389 s13dSG27B0200013_446106 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 19.4 bits (36), Expect(3) = 3.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 3.8
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO514604.1|CO514604 s13dSG42G0600052_327868 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 456
Score = 19.4 bits (36), Expect(3) = 4.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 4.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO516530.1|CO516530 s13dSG57B0800063_446388 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 458
Score = 19.4 bits (36), Expect(3) = 4.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 4.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO511932.1|CO511932 s13dSG05G0300024_103764 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 460
Score = 19.4 bits (36), Expect(3) = 4.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 61 KSSSLLHLLP 32
Score = 18.5 bits (34), Expect(3) = 4.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 159 CSFCC 145
Score = 16.6 bits (30), Expect(3) = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 233 LSTYDPTPFCSS 198
>gb|CO514856.1|CO514856 s13dSG56B1000089_328372 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 19.4 bits (36), Expect(3) = 4.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO514288.1|CO514288 s13dSG76F1100091_157238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 19.4 bits (36), Expect(3) = 4.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 4.2
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 4.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO511792.1|CO511792 s13dSG02B0200025_103484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 24.9 bits (48), Expect = 4.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 104 NNNCTRYMKESAKWLKEFNT 163
N+N T+Y E ++WL + ++
Sbjct: 35 NSNRTQYQTEKSRWLNKLSS 94
>gb|CO512966.1|CO512966 s13dSG86H1200096_121858 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 24.9 bits (48), Expect = 4.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3 / -1
Query: 192 RQLKNRGPHDXGAAHKNXXXW 254
R+ NRG HD G H+ W
Sbjct: 185 RRFVNRGFHDRGFVHRWLIHW 123
>gb|CO516312.1|CO516312 s13dSG69H0900078_445952 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 24.9 bits (48), Expect = 4.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +3 / +3
Query: 3 WDQMCKATSLGLCWTTL 53
W + CK + LCW +
Sbjct: 453 WSKNCKRCEVNLCWKNI 503
>gb|AJ888512.1|AJ888512 AJ888512 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 271
Score = 24.9 bits (48), Expect = 4.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 104 NNNCTRYMKESAKWLKEFNT 163
N+N T+Y E ++WL + ++
Sbjct: 41 NSNRTQYQTEKSRWLNKLSS 100
>emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene
Length = 10048
Score = 24.9 bits (48), Expect = 4.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -1
Query: 14 VQGYFAWSLLDN 49
+QGYFAW +L +
Sbjct: 9319 IQGYFAWKVLQS 9284
>emb|X13289.1|MSNOD25R Medicago sativa mRNA for nodulin-25 (clone 910)
Length = 961
Score = 24.9 bits (48), Expect = 4.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -1
Query: 14 VQGYFAWSLLDN 49
+QGYFAW +L +
Sbjct: 679 IQGYFAWKVLQS 644
>gb|M91078.1|ALFMSPRP Medicago sativa (cultivar Iroquois) MsPRP gene, complete cds
Length = 938
Score = 24.9 bits (48), Expect = 4.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3 / -2
Query: 192 RQLKNRGPHDXGAAHKNXXXW 254
R+ NRG HD G H+ W
Sbjct: 256 RRFVNRGFHDRGFVHRWLFYW 194
>gb|AY027892.1| Medicago sativa PII protein (GLNB) mRNA, complete cds
Length = 796
Score = 24.9 bits (48), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 61 CRLHRTLWHCL 93
CRLH ++HCL
Sbjct: 453 CRLHNFVYHCL 421
>gb|CO516262.1|CO516262 s13dSG69D0100010_445852 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 485
Score = 19.4 bits (36), Expect(3) = 4.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 4.5
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 4.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO514273.1|CO514273 s13dSG76E0700051_157208 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 19.4 bits (36), Expect(3) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.7
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO516211.1|CO516211 s13dSG67G0500040_445750 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 19.4 bits (36), Expect(3) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.7
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO516532.1|CO516532 s13dSG57B1000079_446392 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 19.4 bits (36), Expect(3) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.7
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO516756.1|CO516756 s13dSG94A0600038_446840 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 19.4 bits (36), Expect(3) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.7
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO516820.1|CO516820 s13dSG98B0500042_446968 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 19.4 bits (36), Expect(3) = 4.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 4.7
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 4.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO513890.1|CO513890 s13dSG73G0600040_156442 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 19.4 bits (36), Expect(3) = 5.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 81 KSSSLLHLLP 52
Score = 18.5 bits (34), Expect(3) = 5.2
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 179 CSFCC 165
Score = 16.6 bits (30), Expect(3) = 5.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 253 LSTYDPTPFCSS 218
>gb|CO516765.1|CO516765 s13dSG94B0500042_446858 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 19.4 bits (36), Expect(3) = 5.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 5.2
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 5.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO515701.1|CO515701 s13dSG60G0900072_419551 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 19.4 bits (36), Expect(3) = 5.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 100 KSSSLLHLLP 71
Score = 18.5 bits (34), Expect(3) = 5.5
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 198 CSFCC 184
Score = 16.6 bits (30), Expect(3) = 5.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 272 LSTYDPTPFCSS 237
>gb|CO512380.1|CO512380 s13dSG80C0400022_114274 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 19.4 bits (36), Expect(3) = 5.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 5.9
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 5.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|CO513982.1|CO513982 s13dSG71H1000080_156626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 19.4 bits (36), Expect(3) = 5.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 82 KSSSLLHLLP 53
Score = 18.5 bits (34), Expect(3) = 5.9
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -1
Query: 116 CSYCC 102
CS+CC
Sbjct: 180 CSFCC 166
Score = 16.6 bits (30), Expect(3) = 5.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -2
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 254 LSTYDPTPFCSS 219
>gb|L36120.1|ALFMSA3S Medicago sativa proline-rich protein mRNA, complete cds
Length = 1018
Score = 24.4 bits (47), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1 / -3
Query: 142 VVERVQHREKAQQEDSYASLKIG 210
VVER+Q EK ++E + L G
Sbjct: 383 VVERIQVEEKTEREGEWTELVEG 315
>emb|X88845.1|MSNUM1GEN M.sativa mRNA for nuM1 protein
Length = 2255
Score = 24.4 bits (47), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1 / -2
Query: 91 LRRPQQ*LHALHEGVCQVVERVQHREKAQ 177
L++ Q * ALH + +++ R+ HR+ Q
Sbjct: 916 LQQQQA*TQALHLHLHRILHRILHRKNLQ 830
>gb|CO513395.1|CO513395 s13dSG38E0900067_129954 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 543
Score = 24.4 bits (47), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2 / +3
Query: 152 LSTTWQTPSCSACSY 108
LS +W PSC CS+
Sbjct: 276 LSPSWWLPSCWLCSW 320
>gb|DQ122825.1| Medicago sativa clone M9 syntaxin of plants mRNA, partial cds
Length = 483
Score = 24.4 bits (47), Expect = 5.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2 / +1
Query: 113 CTRYMKESAKWLKEFNTAKK 172
C S WLKE+N A K
Sbjct: 76 CRPMASSSDSWLKEYNEAMK 135
>gb|CO513185.1|CO513185 s13dSG23H0500044_129534 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 19.4 bits (36), Expect(3) = 6.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 84 KSSSLLHLLP 55
Score = 18.5 bits (34), Expect(3) = 6.0
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 182 CSFCC 168
Score = 16.6 bits (30), Expect(3) = 6.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 256 LSTYDPTPFCSS 221
>gb|CO512455.1|CO512455 s13dSG100B080006_114424 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 19.4 bits (36), Expect(3) = 6.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 92 KSSSLLHLLP 63
Score = 18.5 bits (34), Expect(3) = 6.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 190 CSFCC 176
Score = 16.6 bits (30), Expect(3) = 6.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 264 LSTYDPTPFCSS 229
>gb|CO513336.1|CO513336 s13dSG37G1000072_129836 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 19.4 bits (36), Expect(3) = 6.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -2
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 93 KSSSLLHLLP 64
Score = 18.5 bits (34), Expect(3) = 6.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -3
Query: 116 CSYCC 102
CS+CC
Sbjct: 191 CSFCC 177
Score = 16.6 bits (30), Expect(3) = 6.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 265 LSTYDPTPFCSS 230
>gb|CO514811.1|CO514811 s13dSG59E0500039_328282 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 19.4 bits (36), Expect(3) = 6.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 91 KSSSLLHLLP 62
Score = 18.5 bits (34), Expect(3) = 6.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 189 CSFCC 175
Score = 16.6 bits (30), Expect(3) = 6.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 263 LSTYDPTPFCSS 228
>gb|CO514676.1|CO514676 s13dSG46G0400036_328012 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 19.4 bits (36), Expect(3) = 6.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 32 KRSSLAHLIP 3
K SSL HL+P
Sbjct: 93 KSSSLLHLLP 64
Score = 18.5 bits (34), Expect(3) = 6.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -2 / -2
Query: 116 CSYCC 102
CS+CC
Sbjct: 191 CSFCC 177
Score = 16.6 bits (30), Expect(3) = 6.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -3
Query: 152 LSTTWQTPSCSA 117
LST TP CS+
Sbjct: 265 LSTYDPTPFCSS 230
>gb|AJ248325.1|AJ248325 AJ248325 Medicago sativa subsp. x varia young root nodule Medicago
sativa subsp. x varia cDNA clone MsNod374a, mRNA
sequence
Length = 399
Score = 24.0 bits (46), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -1
Query: 155 TLSTTWQTPSCSACS 111
T +TTW TPS +C+
Sbjct: 96 TRNTTWFTPSSISCN 52
>gb|CO512335.1|CO512335 s13dSG68G0500036_114184 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 491
Score = 24.0 bits (46), Expect = 8.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / -2
Query: 146 TTWQTPSCSACSYCC 102
TT PS ACS CC
Sbjct: 166 TTGCLPSSHACSRCC 122
>gb|CO512466.1|CO512466 s13dSG100D020001_114446 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 24.0 bits (46), Expect = 8.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2 / -2
Query: 125 CSACSYCCGRRRQCHN 78
CS+CS+C G H+
Sbjct: 553 CSSCSHCSGSSSNHHH 506
>gb|CO512734.1|CO512734 s13dSG88A0500033_121394 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 24.0 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = -2 / +1
Query: 146 TTWQTPSCSACSYCCGRRRQC 84
+T TP C CC R C
Sbjct: 310 STSHTPRCFGSDRCC*RNNHC 372
>gb|CO513842.1|CO513842 s13dSG73C0500034_156346 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 24.0 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = -2 / +3
Query: 146 TTWQTPSCSACSYCCGRRRQC 84
+T TP C CC R C
Sbjct: 315 STSHTPRCFGSDRCC*RNNHC 377
>gb|CO514898.1|CO514898 s13dSG56G0100008_328456 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 612
Score = 24.0 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = -2 / +1
Query: 146 TTWQTPSCSACSYCCGRRRQC 84
+T TP C CC R C
Sbjct: 316 STSHTPRCFGSDRCC*RNNHC 378
>gb|CO516225.1|CO516225 s13dSG67H1100096_445778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 24.0 bits (46), Expect = 8.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / -2
Query: 146 TTWQTPSCSACSYCC 102
TT PS ACS CC
Sbjct: 166 TTGCLPSSHACSRCC 122
>gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 24.0 bits (46), Expect = 8.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2 / -3
Query: 131 ESAKWLKEFNTAKKPSKK 184
+SAKW++ KK KK
Sbjct: 121 KSAKWIRNLGKKKKKKKK 68
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,409,096
Number of Sequences: 7669
Number of extensions: 25381
Number of successful extensions: 2797
Number of sequences better than 10.0: 62
length of database: 1,248,568
effective HSP length: 39
effective length of database: 949,477
effective search space used: 67412867
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)