TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.4
(753 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA... 107 6e-035
gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA... 107 6e-035
gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, comple... 107 6e-035
>gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA, complete cds
Length = 1267
Score = 107 bits (229), Expect(2) = 6e-035
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -2 / +2
Query: 590 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 417
++PCA+G++YYGRGP+QISWNYNYG GR IG + L +P+ VA D VI+FKTALWFWM
Sbjct: 545 EFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWM 718
Score = 54.2 bits (112), Expect(2) = 6e-035
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -2 / +2
Query: 389 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLTC 249
G+G ING LEC ++ R+G+YK+YC L V G NL C
Sbjct: 809 GYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGANLDC 949
>gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA, complete cds
Length = 1259
Score = 107 bits (229), Expect(2) = 6e-035
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -2 / +1
Query: 590 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 417
++PCA+G++YYGRGP+QISWNYNYG GR IG + L +P+ VA D VI+FKTALWFWM
Sbjct: 544 EFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWM 717
Score = 54.2 bits (112), Expect(2) = 6e-035
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -2 / +1
Query: 389 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLTC 249
G+G ING LEC ++ R+G+YK+YC L V G NL C
Sbjct: 808 GYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGANLDC 948
>gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, complete cds
Length = 987
Score = 107 bits (229), Expect(2) = 6e-035
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -2 / +1
Query: 590 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 417
++PCA+G++YYGRGP+QISWNYNYG GR IG + L +P+ VA D VI+FKTALWFWM
Sbjct: 514 EFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWM 687
Score = 54.2 bits (112), Expect(2) = 6e-035
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -2 / +1
Query: 389 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLTC 249
G+G ING LEC ++ R+G+YK+YC L V G NL C
Sbjct: 778 GYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGANLDC 918
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,697,596
Number of Sequences: 7669
Number of extensions: 37693
Number of successful extensions: 457
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 192705760
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)