TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805363.2.1
(2856 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 262 2e-077
gb|DQ122795.1| Medicago sativa clone M22 putative cellulose... 104 1e-043
gb|AW698890.1|AW698890 r161 non-glandular-haired subtracted... 51 7e-007
gb|CO511999.1|CO511999 s13dSG07E1100087_103898 Glandular tr... 31 0.84
gb|CO514024.1|CO514024 s13dSG72D1000078_156710 Glandular tr... 31 0.84
gb|CB165102.1|CB165102 29 Alfalfa developing flower bud lib... 30 1.6
gb|CO512004.1|CO512004 s13dSG07F0500047_103908 Glandular tr... 29 2.2
gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular tr... 29 2.2
gb|AW698420.1|AW698420 G269 glandular-haired subtracted cDN... 29 3.0
gb|CO511780.1|CO511780 s13dSG02A0200017_103460 Glandular tr... 29 3.0
gb|CO512270.1|CO512270 s13dSG68A0300017_114054 Glandular tr... 29 3.0
gb|CO513329.1|CO513329 s13dSG37G0300020_129822 Glandular tr... 29 3.0
gb|CO513917.1|CO513917 s13dSG71B0400029_156496 Glandular tr... 29 3.0
gb|CO514698.1|CO514698 s13dSG55A0500037_328056 Glandular tr... 29 3.0
gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular tr... 29 3.0
gb|CO515221.1|CO515221 s13dSG96A1100085_399307 Glandular tr... 29 3.0
gb|CO515803.1|CO515803 s13dSG54C0200006_421145 Glandular tr... 29 3.0
emb|Z11498.1|MSRRN26S M.sativa 26S rRNA 29 3.0
gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular tr... 27 3.8
gb|CB165084.1|CB165084 09 Alfalfa developing flower bud lib... 29 4.1
gb|CO516794.1|CO516794 s13dSG94E1100085_446916 Glandular tr... 29 4.1
gb|M83086.1|ALFPPPCA Medicago sativa phosphoenolpyruvate ca... 29 4.1
emb|AX059586.1| Sequence 1 from Patent WO0100852 29 4.1
gb|AF439380.1| Medicago sativa retrotransposon polyprotein ... 29 4.1
gb|CO512363.1|CO512363 s13dSG80A0900065_114240 Glandular tr... 28 5.6
gb|CO512892.1|CO512892 s13dSG86A0200005_121710 Glandular tr... 28 5.6
emb|CQ760962.1| Sequence 7 from Patent WO2004002216 28 5.6
emb|Y08678.1|MSGB1 Medicago sativa mRNA for G protein beta ... 28 5.6
gb|CO515207.1|CO515207 s13dSG62G0800068_399279 Glandular tr... 26 6.2
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 262 bits (566), Expect(2) = 2e-077
Identities = 101/141 (71%), Positives = 114/141 (80%)
Frame = -2 / +1
Query: 1157 ALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLVAYCVLPAICLLTNKF 978
ALGSVEI S+HCPIWYGY G LKLLER +YIN++VYP TS+PL+ YC LPAICLLT KF
Sbjct: 7 ALGSVEIFFSKHCPIWYGYGGGLKLLERFSYINSVVYPWTSLPLIVYCTLPAICLLTGKF 186
Query: 977 IIPAISNYXXXXXXXXXXXXXATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQG 798
I+P ISNY ATGILE++W GVGI+DWWRNEQFWVIGG S+H FA+FQG
Sbjct: 187 IVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQG 366
Query: 797 LLKVLAGIDTNFTVTSKATDD 735
LLKVLAG+DTNFTVTSKA DD
Sbjct: 367 LLKVLAGVDTNFTVTSKAADD 429
Score = 120 bits (256), Expect(3) = 1e-037
Identities = 53/107 (49%), Positives = 64/107 (59%)
Frame = +1 / -3
Query: 745 AFDVTVKFVSIPASTFKRPWNTAKRCAEVPPMTQNCSFLHQSSMPTPLHRSSKIPVAKIE 924
AFDVTVKFVS PA T +PW AK+C E PP+TQNCSFLHQSS+PTP H S+IPVA ++
Sbjct: 419 AFDVTVKFVSTPAKTLSKPWKRAKKCDEAPPITQNCSFLHQSSIPTPPHCISRIPVAAMD 240
Query: 925 AKSRMKNXXXXXXXXXXXXXXVSKQIAGRTQYATSGIDVIG*TMVLM 1065
K M V + +AGR Q +G +V G T M
Sbjct: 239 MKRAMNTRLA*LLISGTINFPVRRHMAGRVQ*TINGREVQGYTTEFM 99
Score = 116 bits (248), Expect = 1e-026
Identities = 59/142 (41%), Positives = 86/142 (60%)
Frame = +3 / -2
Query: 735 IIGCL*CDREVCVDPC*HF*ETLEHSKEMCRGATNDPKLLISPPILNANTTPSKLQNTSG 914
IIGC *C+ EVCVD *+ +TLE K+M +N PKL I PPI+ +NTTP L++T
Sbjct: 429 IIGCF*CNSEVCVDTS*NLEQTLEKGKKM**STSNHPKLFIPPPIIYSNTTPLHLKDTGC 250
Query: 915 EDRSKKQDEERPSIIANRRNNKFVGE*TDSRKDAVCY*WDRCNWINNGVDVCQSLQKL*P 1094
D ++ E + I+A RNNKF G+ T R V W+ I++ + V ++ Q+L P
Sbjct: 249 CDGYEEGHEHKTCIVAYLRNNKFSGQKTYGR*STVDNQWEGSPRIHD*IYVGKTFQQLQP 70
Query: 1095 SIVTIPDRTVSAK*NFN*TKSP 1160
+ V +P+ T+ A+ + N TKSP
Sbjct: 69 TTVAVPNWTMFAEKDLNRTKSP 4
Score = 97.3 bits (206), Expect = 8e-021
Identities = 53/141 (37%), Positives = 75/141 (53%)
Frame = -1 / +3
Query: 1158 GSWFS*NST*QTLSYLVWLQWKAKASGETGIHQHHCLSNYIYPTSSILRPSCYLFTHQQI 979
GSWF *+ QTLS LV L+W + G +H+ +S P +L + ++ + ++I
Sbjct: 6 GSWFC*DLFQQTLSNLVRLRWWVEVVGTFFLHKFSRVSLDFPPIDCLLYSTGHMSSDRKI 185
Query: 978 YYSCD*QLCWGVLHPAFCFYLRHWYFGASMEWCWH*GLVEK*AVLGHWWHLCTSLCCVPR 799
Y S D QLC +H + + Y +M WCW+ LVE+* VLG W T C PR
Sbjct: 186 YCS*DKQLCKSCVHGPLHIHRSNRYP*DAMGWCWNR*LVEE*TVLGDWRCFITFFCPFPR 365
Query: 798 SLKSASRDRHKLHGHIKGNR* 736
+ S RHKLH +IK +R*
Sbjct: 366 FAQGFSWCRHKLHCYIKSSR* 428
Score = 53.3 bits (110), Expect(3) = 6e-013
Identities = 30/53 (56%), Positives = 34/53 (64%)
Frame = -3 / +2
Query: 892 DGVVLALRIGGEMSSFGSLVAPLHISLLCSKVS*KC*QGSTQTSRSHQRQPMM 734
+GVVL IGG M+SFG L HI L SKV + * STQTS HQ+QPMM
Sbjct: 272 NGVVLE*MIGGGMNSFG*LEVLHHIFLPFSKVCSRF*LVSTQTSLLHQKQPMM 430
Score = 44.1 bits (90), Expect(2) = 2e-077
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2 / +1
Query: 737 DDGDFAELYVFKWXXXXXXXXXXXXINLVGIVAGV 633
DDG+F+ELY+FKW +N+VG++ GV
Sbjct: 424 DDGEFSELYIFKWTSLLIPPMTLLIMNIVGVIVGV 528
Score = 43.2 bits (88), Expect(2) = 9e-008
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +2 / -1
Query: 803 GTQQRDVQRCHQ*PKTAHFSTNPQCQHHSIEAPKYQWRR*KQKAG*RTPQHNC*SQE**I 982
G Q++V + Q PKT H STN QHH I + Y+ R + * H+C SQE *I
Sbjct: 361 GKGQKNVMKHLQSPKTVHSSTNHLFQHHPIASQGYRLLRWI*RGP*TQDLHSCLSQEQ*I 182
Score = 39.6 bits (80), Expect(3) = 1e-037
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1 / -3
Query: 1108 YQIGQCLLSRISTEPRA 1158
YQIGQCLL +ISTEPRA
Sbjct: 56 YQIGQCLLKKISTEPRA 6
Score = 31.8 bits (63), Expect(3) = 1e-037
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1 / -3
Query: 634 TPATIPTRLITSTVVGGIRRVVHLN 708
TP PT + ++V+GGI VHLN
Sbjct: 527 TPTITPTIFMINSVIGGINSEVHLN 453
Score = 29.0 bits (57), Expect(2) = 9e-008
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2 / -1
Query: 1064 CMPVSPEALAFHCNHTR*DSVC*VEFQLNQEP 1159
C P H + T+ D+VC* Q NQEP
Sbjct: 100 CRKNVPTTSTHHRSRTKLDNVC*KRSQQNQEP 5
Score = 28.1 bits (55), Expect(3) = 6e-013
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3 / +2
Query: 1159 GLLVQLKFYLADTVLSGMVTMEG*SFWRDWHT 1064
GLLV L+ + A+ V G T+ G*S W + T
Sbjct: 5 GLLVLLRSFSANIVQFGTATVVG*SCWNVFPT 100
Score = 25.4 bits (49), Expect(3) = 6e-013
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3 / +2
Query: 1033 SH**HTASFLLSVYSPTNLLFLRLAIM 953
SH* T + V+ P NLLFLR A M
Sbjct: 131 SH*LSTVLYRPYVF*PENLLFLR*ATM 211
>gb|DQ122795.1| Medicago sativa clone M22 putative cellulose synthase catalytic
subunit mRNA, partial cds
Length = 512
Score = 104 bits (222), Expect(3) = 1e-043
Identities = 37/54 (68%), Positives = 48/54 (88%)
Frame = -2 / +2
Query: 905 ILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKA 744
+LE++WSG+ + DWWRNEQFW+IGGTSAH AV QGLLKV+AG+D +FT+TSK+
Sbjct: 116 LLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKS 277
Score = 78.0 bits (164), Expect(3) = 1e-043
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = -2 / +2
Query: 740 DDDGDFAELYVFKWXXXXXXXXXXXXINLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWV 561
D + +FA+LY+ KW +N + I GV+ + S + W L G LFF+ WV
Sbjct: 290 DGEDEFADLYLVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGLFFSFWV 469
Query: 560 ILHLYPFLKGLMGK 519
+ HLYPF KGL+G+
Sbjct: 470 LCHLYPFAKGLLGR 511
Score = 66.6 bits (139), Expect = 1e-011
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = +1 / -3
Query: 748 FDVTVKFVSIPASTFKRPWNTAKRCAEVPPMTQNCSFLHQSSMPTPLH 891
FDV+V +S PA TF P TA CA VPP+ QNCSFLHQS P H
Sbjct: 273 FDVSVNEMSTPAITFNNPCKTAAGCALVPPINQNCSFLHQSCKVIPDH 130
Score = 39.1 bits (79), Expect(2) = 0.002
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = -1 / +1
Query: 867 LVEK*AVLGHWWHLCTSLCCVPRSLKSASRDRHKLHGHIK 748
LVEK* VL + + CTS C R ++ SR RH +H IK
Sbjct: 154 LVEK*TVLVNRRNECTSCSCFTRIVEGDSRSRHLIHTDIK 273
Score = 38.6 bits (78), Expect = 0.004
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / -2
Query: 741 GCL*CDREVCVDPC*HF*ETLEHSKEMCRGATNDPKLLISPPILNANTTPSKLQ 902
G *C E V C H ++L +S MC + + PKL ISPPI+ +++ P L+
Sbjct: 280 G*F*CQCE*DVYSCYHLQQSL*NSCRMCTRSAD*PKLFISPPIM*SDS*PFDLK 119
Score = 37.3 bits (75), Expect = 0.010
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = -3 / +3
Query: 868 IGGEMSSFGSLVAPLHISLLCSKVS*KC*QGSTQTSRSHQRQPMMMVILLSCM 710
IGGEM+SFG +HI L K *+ *Q T S HQ QP+ + +S +
Sbjct: 153 IGGEMNSFG*SAERVHILQLFYKDC*R**QE*TSHSH*HQNQPLQKMEKMSLL 311
Score = 28.6 bits (56), Expect(3) = 1e-043
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2 / +2
Query: 1019 YCVLPAICLLTNKFIIPAIS 960
YC LPA+ L + +FI+ ++S
Sbjct: 2 YCFLPALSLFSGQFIVQSLS 61
Score = 21.7 bits (41), Expect(2) = 0.002
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1 / +2
Query: 465 ILAAVGEDRPLHIPYPEGS 409
I AVG R L+ P+P+ S
Sbjct: 377 IAIAVGVARTLYSPFPQWS 433
>gb|AW698890.1|AW698890 r161 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 179
Score = 51.0 bits (105), Expect = 7e-007
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -1 / +1
Query: 2073 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTN 1972
R+VYVSRE+RP H K GA+N L+RVS +++N
Sbjct: 76 RVVYVSRERRPSLPHKFKGGALNTLVRVSGLISN 177
Score = 30.4 bits (60), Expect = 1.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1 / -3
Query: 1999 QSIHGTSLLVVLEAWPLFTRNIN 2067
Q I GTS V + WP FTR++N
Sbjct: 150 QCIEGTSFEFVRK*WPSFTRHVN 82
>gb|CO511999.1|CO511999 s13dSG07E1100087_103898 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 30.9 bits (61), Expect = 0.84
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3 / -2
Query: 2013 HQPSCGAGSLASFHEKHKQAVATHSHPCQA 2102
HQP C G L FH+ K A H C++
Sbjct: 439 HQPCCREGQLGCFHKPGKGHGAR*GHSCKS 350
>gb|CO514024.1|CO514024 s13dSG72D1000078_156710 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 30.9 bits (61), Expect = 0.84
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3 / -1
Query: 2013 HQPSCGAGSLASFHEKHKQAVATHSHPCQA 2102
HQP C G L FH+ K A H C++
Sbjct: 448 HQPCCRKGQLGCFHKPGKGHGAR*GHSCKS 359
>gb|CB165102.1|CB165102 29 Alfalfa developing flower bud library Medicago sativa cDNA, mRNA
sequence
Length = 195
Score = 29.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1 / +2
Query: 1104 LQWKAKASGETGIHQHHCLSNYIYPTSSILRPS 1006
+ WK++++ + H H LS PTSS LR S
Sbjct: 68 IDWKSRSNNPSNHHVHTTLSTRH*PTSSPLRSS 166
>gb|CO512004.1|CO512004 s13dSG07F0500047_103908 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 419
Score = 29.5 bits (58), Expect = 2.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3 / -3
Query: 2052 HEKHKQAVATHSHPCQAHHCG 2114
H H+ H H C HHCG
Sbjct: 393 HCIHRHRCGNHLHLCNHHHCG 331
>gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 29.5 bits (58), Expect = 2.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3 / +3
Query: 240 KCSRVNLNDTSSPPTKKSLA 299
KCS + ++D+ SPP K+S++
Sbjct: 456 KCSSIMIDDSESPPLKRSVS 515
>gb|AW698420.1|AW698420 G269 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 405
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 99 DIQSTGQKSHCVNIRRDHRNAL 34
>gb|CO511780.1|CO511780 s13dSG02A0200017_103460 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 207
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 145 DIQSTGQKSHCVNIRRDHRNAL 80
>gb|CO512270.1|CO512270 s13dSG68A0300017_114054 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 381
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 111 DIQSTGQKSHCVNIRRDHRNAL 46
>gb|CO513329.1|CO513329 s13dSG37G0300020_129822 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 77 DIQSTGQKSHCVNIRRDHRNAL 12
>gb|CO513917.1|CO513917 s13dSG71B0400029_156496 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 461
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 144 DIQSTGQKSHCVNIRRDHRNAL 79
>gb|CO514698.1|CO514698 s13dSG55A0500037_328056 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 366
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 347 DIQSTGQKSHCVNIRRDHRNAL 282
>gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 29.0 bits (57), Expect = 3.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 240 KCSRVNLNDTSSPPTKKS 293
KCS + ++D+ SPP K+S
Sbjct: 354 KCSSIMIDDSESPPVKRS 407
>gb|CO515221.1|CO515221 s13dSG96A1100085_399307 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 239
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 96 DIQSTGQKSHCVNIRRDHRNAL 31
>gb|CO515803.1|CO515803 s13dSG54C0200006_421145 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 204
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 144 DIQSTGQKSHCVNIRRDHRNAL 79
>emb|Z11498.1|MSRRN26S M.sativa 26S rRNA
Length = 1617
Score = 29.0 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC+ +RR RNAL
Sbjct: 532 DIQSTGQKSHCVNIRRDHRNAL 467
>gb|CO515781.1|CO515781 s13dSG77H0100016_419711 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 27.2 bits (53), Expect(2) = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 633 HSSHYTNQVNHKH 671
H SHYT ++H+H
Sbjct: 54 HMSHYTTMISHRH 92
Score = 22.1 bits (42), Expect(2) = 3.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1 / +2
Query: 1252 PLACILKPVKISSVTEPYI 1308
P CI++ K +S EPY+
Sbjct: 272 PPFCIIESTKGNSTFEPYL 328
>gb|CB165084.1|CB165084 09 Alfalfa developing flower bud library Medicago sativa cDNA, mRNA
sequence
Length = 283
Score = 28.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1 / -2
Query: 633 VVCYQQWLPIMGSTIREAVLCN 568
+V WLP++GS +R LCN
Sbjct: 135 IVMAMPWLPVLGSDLRI*SLCN 70
>gb|CO516794.1|CO516794 s13dSG94E1100085_446916 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 28.6 bits (56), Expect = 4.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1 / +3
Query: 264 RLSSLYCIWGGQHETLSTYVVLLICS 187
R SL + GQ +LS+ VVLL+CS
Sbjct: 96 RSLSLLLLVSGQPSSLSSMVVLLVCS 173
>gb|M83086.1|ALFPPPCA Medicago sativa phosphoenolpyruvate carboxylase mRNA, complete cds
Length = 3317
Score = 28.6 bits (56), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1 / +2
Query: 828 LCTSLCCVPRSLKSASRDRHKLHGHIKGNR 739
L TSL + RSL SR R KLH + +R
Sbjct: 692 LKTSLLMISRSLMKLSRGRFKLHSVLTKSR 781
>emb|AX059586.1| Sequence 1 from Patent WO0100852
Length = 2901
Score = 28.6 bits (56), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1 / +2
Query: 828 LCTSLCCVPRSLKSASRDRHKLHGHIKGNR 739
L TSL + RSL SR R KLH + +R
Sbjct: 587 LKTSLLMISRSLMKLSRGRFKLHSVLTKSR 676
>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
retroelement MCIRE, complete sequence
Length = 18789
Score = 28.6 bits (56), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1 / -2
Query: 820 CAEVPPMTQNCSFLHQSSMPTPL 888
C+ + + NCSFL +S+ +PL
Sbjct: 10235 CSNISSLLSNCSFLSTTSITSPL 10167
>gb|CO512363.1|CO512363 s13dSG80A0900065_114240 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 28.1 bits (55), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2 / -1
Query: 1535 DLKVTRMKGHCLCLRRAWRNAL 1470
D++ T K HC +RR RNAL
Sbjct: 398 DIQSTGQKSHCANIRRDHRNAL 333
>gb|CO512892.1|CO512892 s13dSG86A0200005_121710 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 28.1 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3 / -1
Query: 573 KEQLPE*WTP*LVATVDSIRHSSHYTNQVNHKH 671
++ P W + AT+ S+ + SH+ ++ HKH
Sbjct: 184 EKNCPSTWEQFIWATILSLSNGSHFNHKHYHKH 86
>emb|CQ760962.1| Sequence 7 from Patent WO2004002216
Length = 1424
Score = 28.1 bits (55), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2 / +2
Query: 158 C*LS*LPVHRGLWTVVV*SVCW 93
C S L +H+GLW V V +CW
Sbjct: 1220 CG*SVLSIHQGLWLVHVCWLCW 1285
>emb|Y08678.1|MSGB1 Medicago sativa mRNA for G protein beta subunit-like protein (gbl
gene)
Length = 1259
Score = 28.1 bits (55), Expect = 5.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3 / -1
Query: 1992 RESKHSWHQPSCGAGSLASFHEKHKQAVATHSHPC 2096
+ESK S+ QP+ A SL H+KH++ C
Sbjct: 737 QESKVSFPQPNPTAKSLHLSHQKHRENHQVKQQQC 633
>gb|CO515207.1|CO515207 s13dSG62G0800068_399279 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 25.8 bits (50), Expect(2) = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1 / +1
Query: 993 THQQIYYSCD*QLCWGVLHPAFCFYLRHW 907
T +IY SC C+G L +C Y +W
Sbjct: 205 TCYEIYCSCCYGWCFGYLWFDYCCYY*YW 291
Score = 22.6 bits (43), Expect(2) = 6.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3 / +1
Query: 2041 RLPAPQEGWCHECFDSRISCPDEW 1970
RLP + G C + S I +EW
Sbjct: 97 RLPRRRRGTCFLMYGSGIRNSEEW 168
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 26,444,946
Number of Sequences: 7669
Number of extensions: 399705
Number of successful extensions: 1635
Number of sequences better than 10.0: 33
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 810693570
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)