TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.3
(985 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515573.1|CO515573 s13dSG47A0200017_418205 Glandular tr... 349 3e-097
gb|CO512608.1|CO512608 s13dSG13C0400022_121142 Glandular tr... 347 1e-096
gb|CO514475.1|CO514475 s13dSG43B0600047_327610 Glandular tr... 324 1e-089
gb|CO513390.1|CO513390 s13dSG38E0400023_129944 Glandular tr... 256 4e-069
gb|AJ966562.1|AJ966562 AJ966562 Medicago sativa subsp. falc... 126 4e-030
gb|CO513639.1|CO513639 s13dSG17A0400021_140060 Glandular tr... 115 1e-026
>gb|CO515573.1|CO515573 s13dSG47A0200017_418205 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 572
Score = 349 bits (757), Expect = 3e-097
Identities = 150/160 (93%), Positives = 157/160 (98%)
Frame = -2 / +3
Query: 915 KLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 736
KLDPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL
Sbjct: 90 KLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 269
Query: 735 TVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARTMRHRSMA 556
TVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKH+GNISLDDVIEIA+ M+ RSMA
Sbjct: 270 TVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMA 449
Query: 555 KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEI 436
KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDG+VEI
Sbjct: 450 KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEI 569
Score = 240 bits (518), Expect = 2e-064
Identities = 110/142 (77%), Positives = 119/142 (83%)
Frame = +2 / -2
Query: 488 PSTVHPTLTQVPRISLTVPANSLAMDLCLMVLAISMTSSRLMLPLCLMFLTFLRSLSGSL 667
PSTVHPT TQVP+IS TVPA+S A+DL ++ AIS+TSS + PLCLMFL FLRSLSGS
Sbjct: 517 PSTVHPTETQVPKISFTVPASSFAIDLGFIIFAISITSSSEIFPLCLMFLVFLRSLSGSF 338
Query: 668 SALMTSAAAEGTTETLACRFWTVSLTVTRRPFQSLAVSLAMSSPIFLGERPSGPILGASE 847
AL+TSAAA+GTT TLA RF TVSLTVT RPFQSLAVSLAMSSPIF GERP GPILGA E
Sbjct: 337 KALITSAAADGTTATLA*RF*TVSLTVTLRPFQSLAVSLAMSSPIFFGERPRGPILGARE 158
Query: 848 DAAPTSPPVTRTNTSTTCDGSS 913
AAPTSPPVTRT TST DGSS
Sbjct: 157 LAAPTSPPVTRT*TSTIWDGSS 92
>gb|CO512608.1|CO512608 s13dSG13C0400022_121142 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 563
Score = 347 bits (753), Expect = 1e-096
Identities = 149/159 (93%), Positives = 156/159 (98%)
Frame = -2 / +3
Query: 915 KLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 736
KLDPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL
Sbjct: 87 KLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 266
Query: 735 TVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARTMRHRSMA 556
TVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKH+GNISLDDVIEIA+ M+ RSMA
Sbjct: 267 TVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMA 446
Query: 555 KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVE 439
KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDG+VE
Sbjct: 447 KELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVE 563
Score = 240 bits (518), Expect = 2e-064
Identities = 110/142 (77%), Positives = 119/142 (83%)
Frame = +2 / -2
Query: 488 PSTVHPTLTQVPRISLTVPANSLAMDLCLMVLAISMTSSRLMLPLCLMFLTFLRSLSGSL 667
PSTVHPT TQVP+IS TVPA+S A+DL ++ AIS+TSS + PLCLMFL FLRSLSGS
Sbjct: 514 PSTVHPTETQVPKISFTVPASSFAIDLGFIIFAISITSSSEIFPLCLMFLVFLRSLSGSF 335
Query: 668 SALMTSAAAEGTTETLACRFWTVSLTVTRRPFQSLAVSLAMSSPIFLGERPSGPILGASE 847
AL+TSAAA+GTT TLA RF TVSLTVT RPFQSLAVSLAMSSPIF GERP GPILGA E
Sbjct: 334 KALITSAAADGTTATLA*RF*TVSLTVTLRPFQSLAVSLAMSSPIFFGERPRGPILGARE 155
Query: 848 DAAPTSPPVTRTNTSTTCDGSS 913
AAPTSPPVTRT TST DGSS
Sbjct: 154 LAAPTSPPVTRT*TSTIWDGSS 89
>gb|CO514475.1|CO514475 s13dSG43B0600047_327610 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 324 bits (701), Expect = 1e-089
Identities = 139/148 (93%), Positives = 145/148 (97%)
Frame = -2 / +3
Query: 915 KLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 736
KLDPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL
Sbjct: 75 KLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 254
Query: 735 TVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARTMRHRSMA 556
TVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKH+GNISLDDVIEIA+ M+ RSMA
Sbjct: 255 TVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMA 434
Query: 555 KELAGTVKEILGTCVSVGCTVDGKDPKD 472
KELAGTVKEILGTCVSVGCTVDGKDPKD
Sbjct: 435 KELAGTVKEILGTCVSVGCTVDGKDPKD 518
Score = 246 bits (531), Expect = 4e-066
Identities = 109/142 (76%), Positives = 118/142 (83%)
Frame = +2 / -2
Query: 488 PSTVHPTLTQVPRISLTVPANSLAMDLCLMVLAISMTSSRLMLPLCLMFLTFLRSLSGSL 667
PSTVHPT TQVPRIS TVPA+S A+DL ++ AIS+TSS + PLCL+F F SLSGS
Sbjct: 502 PSTVHPTETQVPRISFTVPASSFAIDLGFIIFAISITSSSEIFPLCLIFFVFFLSLSGSF 323
Query: 668 SALMTSAAAEGTTETLACRFWTVSLTVTRRPFQSLAVSLAMSSPIFLGERPSGPILGASE 847
+AL+TSAAAEGTT T A RFWTVSLTVTRRPFQS AVSLAMSSPIF GERP GPILGA E
Sbjct: 322 NALITSAAAEGTTATFA*RFWTVSLTVTRRPFQSFAVSLAMSSPIFFGERPRGPILGARE 143
Query: 848 DAAPTSPPVTRTNTSTTCDGSS 913
AAPTSPPVTRT TST CDGSS
Sbjct: 142 LAAPTSPPVTRT*TSTICDGSS 77
>gb|CO513390.1|CO513390 s13dSG38E0400023_129944 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 440
Score = 256 bits (553), Expect = 4e-069
Identities = 111/120 (92%), Positives = 117/120 (97%)
Frame = -2 / +2
Query: 915 KLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 736
KLDPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL
Sbjct: 80 KLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 259
Query: 735 TVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARTMRHRSMA 556
TVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKH+GNISLDDVIEIA+ M+ RSMA
Sbjct: 260 TVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMA 439
Score = 197 bits (425), Expect = 2e-051
Identities = 92/119 (77%), Positives = 99/119 (83%)
Frame = +2 / -3
Query: 557 AMDLCLMVLAISMTSSRLMLPLCLMFLTFLRSLSGSLSALMTSAAAEGTTETLACRFWTV 736
A+DL ++ AIS+TSS + PLCLMFL FLRSLSGS AL+TSAAA+GTT TLA RF TV
Sbjct: 438 AIDLGFIIFAISITSSSEIFPLCLMFLVFLRSLSGSFKALITSAAADGTTATLA*RF*TV 259
Query: 737 SLTVTRRPFQSLAVSLAMSSPIFLGERPSGPILGASEDAAPTSPPVTRTNTSTTCDGSS 913
SLTVT RPFQSLAVSLAMSSPIF GERP GPILGA E AAPTSPPVTRT TST DGSS
Sbjct: 258 SLTVTLRPFQSLAVSLAMSSPIFFGERPRGPILGARELAAPTSPPVTRT*TSTIWDGSS 82
>gb|AJ966562.1|AJ966562 AJ966562 Medicago sativa subsp. falcata flower buds Medicago sativa
subsp. falcata cDNA clone Em13, mRNA sequence
Length = 280
Score = 126 bits (270), Expect = 4e-030
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = -2 / -3
Query: 627 KHSGNISLDDVIEIARTMRHRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDG 448
KH+GNISLDDVIEIA+ M+ RSMAKELAG VKEILGTCVSVG DGKDPK LQQ+IDDG
Sbjct: 278 KHNGNISLDDVIEIAKIMKPRSMAKELAGAVKEILGTCVSVGVLCDGKDPKHLQQQIDDG 99
Query: 447 EVEIP 433
+VEIP
Sbjct: 98 DVEIP 84
>gb|CO513639.1|CO513639 s13dSG17A0400021_140060 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 115 bits (245), Expect = 1e-026
Identities = 49/58 (84%), Positives = 52/58 (89%)
Frame = -2 / +2
Query: 591 EIARTMRHRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIPSA*EG 418
EIA+ M+ RSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEI DG+VEIP * G
Sbjct: 5 EIAKIMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD*GG 178
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,190,766
Number of Sequences: 7669
Number of extensions: 77160
Number of successful extensions: 1278
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 260939484
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)