TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular tr... 123 3e-029
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 109 7e-025
gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA bin... 107 2e-024
>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 468
Score = 123 bits (264), Expect = 3e-029
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = -3 / +2
Query: 646 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 467
S KLF+GGL W VD+ L++AFSSFG+VTE R++ D+++GR+RGFGFV +S+ DAAK A
Sbjct: 137 SNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAK 316
Query: 466 SAMDGKEIDGRQVRVNMANERPAG 395
AM GK + GR +R+N A E+P G
Sbjct: 317 DAMGGKALLGRPLRINFALEKPRG 388
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 109 bits (232), Expect = 7e-025
Identities = 39/82 (47%), Positives = 59/82 (71%)
Frame = -3 / +2
Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
+ F+GGL W D+ L +AFS +GE+ ++++I DRETGRSRGFGFV +++ + +AI A
Sbjct: 98 RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 277
Query: 460 MDGKEIDGRQVRVNMANERPAG 395
M+G+++DGR + VN A R G
Sbjct: 278 MNGQDLDGRNITVNQAQSRGXG 343
>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
partial cds
Length = 318
Score = 107 bits (229), Expect = 2e-024
Identities = 38/82 (46%), Positives = 59/82 (71%)
Frame = -3 / +1
Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
+ F+GGL W D+ L +AFS +GE+ ++++I DRETGRSRGFGFV +++ + + I A
Sbjct: 22 RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDVIEA 201
Query: 460 MDGKEIDGRQVRVNMANERPAG 395
M+G+++DGR + VN A R +G
Sbjct: 202 MNGQDLDGRNITVNQAQSRGSG 267
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,249,704
Number of Sequences: 7669
Number of extensions: 94059
Number of successful extensions: 1004
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 262777086
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)