TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular tr... 147 2e-036
gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular tr... 146 2e-036
gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular tr... 146 2e-036
gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular tr... 146 3e-036
>gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 147 bits (315), Expect = 2e-036
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQ TYDKLL+E PKYK ITPS+LS+RLR+NGSLARRAI+DLMAKGLIR+VS H
Sbjct: 176 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 355
Query: 386 SSQQIYTRATNT*GVFCVLRTLSV 457
SSQQIYTRATNT* + + +SV
Sbjct: 356 SSQQIYTRATNT*VLLILSCRVSV 427
>gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 146 bits (314), Expect = 2e-036
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQ TYDKLL+E PKYK ITPS+LS+RLR+NGSLARRAI+DLMAKGLIR+VS H
Sbjct: 192 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 371
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 372 SSQQIYTRATNT* 410
>gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 146 bits (314), Expect = 2e-036
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQ TYDKLL+E PKYK ITPS+LS+RLR+NGSLARRAI+DLMAKGLIR+VS H
Sbjct: 184 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 363
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 364 SSQQIYTRATNT* 402
>gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 146 bits (313), Expect = 3e-036
Identities = 61/72 (84%), Positives = 67/72 (93%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQ TYDKLL+E PKYK ITPS+LS+RLR+NGSLARRAI+DLMAKGLIR+VS H
Sbjct: 171 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 350
Query: 386 SSQQIYTRATNT 421
SSQQIYTRATNT
Sbjct: 351 SSQQIYTRATNT 386
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,159,037
Number of Sequences: 7669
Number of extensions: 49826
Number of successful extensions: 630
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 180661650
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)