TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131591.2.2
(1252 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammo... 278 8e-076
gb|CO514770.1|CO514770 s13dSG59A0400033_328200 Glandular tr... 199 8e-052
gb|CO515319.1|CO515319 s13dSG48E0900071_417697 Glandular tr... 188 2e-048
gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular tr... 181 1e-046
gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular tr... 150 3e-037
>emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammonia-lyase
Length = 2409
Score = 278 bits (602), Expect = 8e-076
Identities = 116/136 (85%), Positives = 125/136 (91%)
Frame = -3 / +1
Query: 410 RADNSVNDNPVIDVLRGKALHGGNFQGTPIGVSMDNARLAVANIGKLMFAQFSELVNEFY 231
R NSVNDNP+IDV R KALHGGNFQGTPIGVSMDN RLA+A+IGKLMFAQFSELVN+FY
Sbjct: 1249 REINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFY 1428
Query: 230 NNGLTSNLAGSRNPSLDYGFKGTEIAMASYCSELQYLGNPITNHVQSAEQHNQDVNSLGL 51
NNGL SNL+ SRNPSLDYGFKG EIAMASYCSELQYL NP+T HVQSAEQHNQDVNSLGL
Sbjct: 1429 NNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGL 1608
Query: 50 VSARKTAEAIDILKLM 3
+SARKT EAI+IL+LM
Sbjct: 1609 ISARKTNEAIEILQLM 1656
Score = 203 bits (437), Expect = 5e-053
Identities = 92/134 (68%), Positives = 105/134 (78%)
Frame = +1 / -2
Query: 1 DMSFRMSIASAVFLAETRPREFTSWLCCSALCTWLVMGLPRYWSSEQ*DAMAISVPLNP* 180
DMS R+S+AS VFLAE +P+EFTSWLCCSAL TW+V G RY +SEQ*+AMAIS PL P*
Sbjct: 1658 DMS*RISMASFVFLAEIKPKEFTSWLCCSALWTWVVTGFARYCNSEQ*EAMAISAPLKP* 1479
Query: 181 SRLGLRLPARLEVSPLL*NSLTSSENCANMSLPMLATARRALSMDTPIGVPWKLPPCSAL 360
S+LG L R E +PLL* SLTSSEN AN+SLP+ A A+R LSMDTPIGVP K PPC AL
Sbjct: 1478 SKLGFLLAERFEGNPLL*KSLTSSEN*ANISLPIDARAKRVLSMDTPIGVP*KFPPCKAL 1299
Query: 361 PRRTSMTGLSFTEL 402
TS+ GLS TEL
Sbjct: 1298 FLETSIKGLSLTEL 1257
>gb|CO514770.1|CO514770 s13dSG59A0400033_328200 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 199 bits (428), Expect = 8e-052
Identities = 75/135 (55%), Positives = 112/135 (82%)
Frame = +2 / +1
Query: 539 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSL 718
MANA SG+AV+D+C LKF EL++KR HRFI +K+++K K+++V+++G+ A Y++FT L
Sbjct: 148 MANAASGMAVHDDCKLKFMELKAKRTHRFIVYKIEEKQKQVIVEKLGEPAEGYENFTACL 327
Query: 719 PENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVE 898
P ++CRYA+YDF+++T E+V KSRIF+I WSP +A+V+SKM+YAS+ ++FK L+GIQ+E
Sbjct: 328 PADECRYAVYDFEYLTEENVPKSRIFFIGWSPDTARVRSKMIYASTKERFKRELDGIQIE 507
Query: 899 LQATDASEISLDEIK 943
LQATD +E+ LD K
Sbjct: 508 LQATDPTEMGLDVFK 552
Score = 105 bits (223), Expect = 2e-023
Identities = 63/125 (50%), Positives = 74/125 (59%)
Frame = -2 / -2
Query: 909 VAWSST*MPLRPLLNFWFELA*SILLFTLAEDGDHRI*KILLFWTSSAVTKSKS*IAYRQ 730
VA +S *+P LLN LA* ILL TLA GDH + KILL T S+V SKS* A R
Sbjct: 518 VACNSI*IPSSSLLNLSLVLA*IILLLTLAVSGDHPMKKILLLGTFSSVRYSKS*TA*RH 339
Query: 729 SFSGRLFVKSS*LVARSPTWXXXXXXXXXXXLKVMKRCSLFDCSSPNFSMHSSFTATPDL 550
S +GR VK S* A SP++ L M RC LF SS NF++ SS+TA PD
Sbjct: 338 SSAGRHAVKFS*PSAGSPSFSTMTCFCFSSILYTMNRCVLFALSSINFNLQSSWTAIPDA 159
Query: 549 AFAIS 535
AFA+S
Sbjct: 158 AFAMS 144
>gb|CO515319.1|CO515319 s13dSG48E0900071_417697 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 644
Score = 188 bits (404), Expect = 2e-048
Identities = 70/135 (51%), Positives = 107/135 (79%)
Frame = +2 / +1
Query: 539 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSL 718
MANA SG+AV+D+C L+F EL++KR HRFI +K+++K ++++V+++G+ Y+ F L
Sbjct: 100 MANAASGMAVHDDCKLRFMELKAKRTHRFIIYKIEEKQRQVIVEKLGEPVEGYEQFAACL 279
Query: 719 PENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVE 898
P ++CRYA++D++F+T +V KSRIF+I WSP +++V+SKM+YASS +FK L+GIQ+E
Sbjct: 280 PADECRYAVFDYEFMTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 459
Query: 899 LQATDASEISLDEIK 943
LQATD +EI LD K
Sbjct: 460 LQATDPTEIGLDVFK 504
>gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 181 bits (390), Expect = 1e-046
Identities = 67/128 (52%), Positives = 103/128 (80%)
Frame = +2 / +1
Query: 539 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSL 718
MANA SG+AV+D+C L+F EL++KR HRFI +K+++K K+++V+++G+ Y+ F L
Sbjct: 145 MANAASGMAVHDDCKLRFMELKAKRTHRFIIYKIEEKQKQVIVEKLGEPVEGYEQFAACL 324
Query: 719 PENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVE 898
P ++CRYA++D++F+T +V KSRIF+I WSP +++V+SKM+YASS +FK L+GIQ+E
Sbjct: 325 PADECRYAVFDYEFMTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 504
Query: 899 LQATDASE 922
LQATD +E
Sbjct: 505 LQATDPTE 528
>gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 437
Score = 150 bits (323), Expect = 3e-037
Identities = 54/106 (50%), Positives = 86/106 (81%)
Frame = +2 / +1
Query: 539 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSL 718
MANA SG+AV+D+C L+F EL++KR HRFI +K+++K K+++V+++G+ Y+ F L
Sbjct: 112 MANAASGMAVHDDCKLRFMELKAKRTHRFIIYKIEEKQKQVIVEKLGEPVEGYEQFAACL 291
Query: 719 PENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASS 856
P ++CRYA++D++F+T +V KSRIF+I WSP +++V+SKM+YASS
Sbjct: 292 PADECRYAVFDYEFMTEGNVPKSRIFFIAWSPDTSRVRSKMIYASS 429
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,801,735
Number of Sequences: 7669
Number of extensions: 120291
Number of successful extensions: 935
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 342712773
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)