TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Ka... 186 3e-048
>gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U40, mRNA sequence
Length = 757
Score = 186 bits (400), Expect = 3e-048
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 126 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 305
Query: 364 EMWTEIPKTGKGKKKALPVNKDRF 435
EMWTE+PKTGKGKKKA PVNKD F
Sbjct: 306 EMWTEVPKTGKGKKKAQPVNKDPF 377
Score = 119 bits (254), Expect = 5e-028
Identities = 55/72 (76%), Positives = 58/72 (80%)
Frame = -3 / -1
Query: 434 NLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLT 255
N SL TG AFF PLPVLG SVHISRTFS T+LQ SKA TRP SFLLLRQL+RT VLF T
Sbjct: 376 NGSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALTRPRSFLLLRQLIRTCVLFFT 197
Query: 254 LIIRTDRGPVLN 219
LI+ TD GPVLN
Sbjct: 196 LIMSTDSGPVLN 161
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,332,214
Number of Sequences: 7669
Number of extensions: 82290
Number of successful extensions: 1137
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 188073410
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)